| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 775904 = | 52 (1.030) | 4 (0.080) | 4/248 | NT | 7.8% | coding (10/966 nt) | PP_0668 | transmembrane sensor |
| ? | NC_002947 | 775968 = | 44 (0.910) | coding (74/966 nt) | PP_0668 | transmembrane sensor | |||||
TGTGAACAGTTACCTGGCTCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCAAGTGTTCGACAGC > NC_002947/775823‑776116 | ctacgtacgaccaggccaggcgatgccgcgtatcctcgttcagccaggcatgccactgcgcctggatcgcagcgtcattgtGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACaa < 1:68696‑M1/68‑1 (MQ=255) cgtacgaccaggccaggcgatgccgcgtatcctcgttcagccaggcatgccactgcgcctggatcgcagcgtcattgtGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACaa > 2:68696‑M1/79‑146 (MQ=255) cgtacgaccaggccaggcgatgccgcgtatcctcgttcagccaggcatgccactgcgcctggatcgcagcgtcattgtGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATg > 8:84985‑M1/79‑148 (MQ=255) aaCAGTTACCTGGCTCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGa < 6:132369/148‑1 (MQ=255) cTGGCTCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATc > 3:251327/1‑149 (MQ=255) cTCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAgg < 2:41127/149‑1 (MQ=255) tCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGgc > 5:13687/1‑149 (MQ=255) tCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGgc > 4:257974/1‑149 (MQ=255) aGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGgc < 3:257974/147‑1 (MQ=255) caaggcatACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCa < 5:162008/142‑1 (MQ=255) gCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAg > 2:108930/1‑149 (MQ=255) tATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTg > 3:315760/1‑149 (MQ=255) cAATGCCTGCTGCTGGAAGCCGAACTTGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGcc < 8:203849/149‑1 (MQ=255) cAATGCCTGCTGCTGGAAGCCGAACTGGATCGCGCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGcc < 2:248113/149‑1 (MQ=255) tgctgGAAGCCGAACTCGATGGCTCGCTGGCATGAGAAGGGCGCAACTCGACCATGCAGTACTGCAAGCGGCTGCAGGTTGGTTCGCACGGCTGCAATCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAAc > 1:144849/1‑148 (MQ=255) ggAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGa > 8:269645/1‑149 (MQ=255) gAAGCCGATCTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAgg < 7:215543/147‑1 (MQ=255) gAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGAt < 6:13687/149‑1 (MQ=255) aTGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCgcc < 4:251327/149‑1 (MQ=255) gCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCgcctg < 4:315760/148‑1 (MQ=255) gCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCgcctg < 1:108930/148‑1 (MQ=255) cTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGTATGCCTGGCTGAACGAGGATACGCGGCATCgcctggc < 7:104326/149‑1 (MQ=255) tCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCgcctggcc > 5:196363/1‑149 (MQ=255) tCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGCCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCgcctggcc > 1:101527/1‑149 (MQ=255) tCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGACTGCACGCGGCGCACAATGACGCTg < 4:34560/93‑1 (MQ=255) tCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGACTGCACGCGGCGCACAATGACGCTg > 3:34560/1‑93 (MQ=255) gCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGACTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTcg > 7:14457/1‑149 (MQ=255) aTGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTcgta > 3:43178/1‑149 (MQ=255) cattgtgcgccgcgtgcagccgtgcgaaccaaccggcagccgcttgcagtacggcatggtcgagtggcgcACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTcgtacg > 8:84985‑M2/71‑148 (MQ=255) ttgtgcgccgcgtgcagccgtgcgaaccaaccggcagccgcttgcagtacggcatggtcgagtggcgcACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTcgtacg > 2:68696‑M2/69‑146 (MQ=255) ttgtgcgccgcgtgcagccgtgcgaaccaaccggcagccgcttgcagtacggcatggtcgagtggcgcACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTag < 1:68696‑M2/81‑1 (MQ=255) aGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATCCGCGGCATCGCCTGGCCTGGTcgtacgta > 7:56742/1‑147 (MQ=255) gggCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTagag < 3:260744/149‑1 (MQ=255) GCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGaa > 6:196363‑M1/1‑149 (MQ=255) CGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGaa < 8:180470‑M1/148‑1 (MQ=255) CCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACAt < 2:191472‑M1/149‑1 (MQ=255) cgcgtgcagccgtgcgaaccaaccggcagccgcttgcagtacggcatggtcgagtggcgcACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACatc < 7:84985‑M2/89‑1 (MQ=255) CACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACAt < 6:290112‑M1/148‑1 (MQ=255) cAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCt > 4:34278/1‑149 (MQ=255) gCCGGTGTGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATGAGCGCTTTGGCGGCCTCAGCGGCCa < 8:264657/149‑1 (MQ=255) ccGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGcc < 5:290112/147‑1 (MQ=255) ccGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGcc < 8:56742/147‑1 (MQ=255) cGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACatcaatca > 3:35694/1‑123 (MQ=255) cGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACatcaatca < 4:35694/123‑1 (MQ=255) ggttggttCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTagag < 6:234089/111‑1 (MQ=255) ggttggttCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTagag > 5:234089/1‑111 (MQ=255) ggttggttCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCATTCAGCGCTTTGGCGGCCTCAGCGGCCAGGc < 1:191472/149‑1 (MQ=255) gttggttCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAgg > 8:260409/1‑147 (MQ=255) gttCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCagag > 2:92787/1‑148 (MQ=255) gttCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCagag < 2:101527/148‑1 (MQ=255) ttCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCa < 7:180470/149‑1 (MQ=255) tCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAg > 4:99706/1‑149 (MQ=255) gCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGc > 2:71889/1‑149 (MQ=255) cACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCt > 3:81945/1‑149 (MQ=255) aCGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGACTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTc < 8:14457/149‑1 (MQ=255) cACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCaa < 3:200700/147‑1 (MQ=255) cACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCaa > 4:200700/1‑147 (MQ=255) gcgcGCAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCAAGTGTTCGa > 3:284707‑M2/5‑149 (MQ=255) cACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCCTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCAAGTGTTCGAAAg > 7:247701‑M2/2‑149 (MQ=255) acaATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCAAGTGTTCGACAGc > 8:225435/1‑149 (MQ=255) | TGTGAACAGTTACCTGGCTCAGGCTATGTACCAATGCCTGCTGCTGGAAGCCGAACTGGATGGCTCGCTGGCATGAGCAGGGCGCCACTCGACCATGCCGTACTGCAAGCGGCTGCCGGTTGGTTCGCACGGCTGCACGCGGCGCACAATGACGCTGCGATCCAGGCGCAGTGGCATGCCTGGCTGAACGAGGATACGCGGCATCGCCTGGCCTGGTCGTACGTAGAGAACATCAATCAGCGCTTTGGCGGCCTCAGCGGCCAGGCAGAGCAGGCTCGGCAAGTGTTCGACAGC > NC_002947/775823‑776116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |