New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1206555 =	55 (1.090)	3 (0.060)	3/246	NT	5.9%	coding (2446/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	1206594 =	43 (0.900)					coding (2407/3150 nt)	PP_1058	hypothetical protein

CGATGGCGGTGGCCAATGAGGGCACCAGGTGGTCGAATGGATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCTGGTCGGGCAGGTCGTA  >  NC_002947/1206447‑1206735                                                                                                                                                    |                                                                                                                                              tccacccgctggacctgtggctgcttggctacctgctgaagaacccgagctcgacactgaccgagatgatcaacgccactcgtttcgaacgccaggaggtatacggctGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAAcagccag                                                                                                                                              >  8:100780‑M1/109‑149 (MQ=255)          tGGCCAATGAGGGCACCAGGTGGTCGAATGGATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATAcc                                                                                                                                     >  7:196573/1‑149 (MQ=255)                   aGGGCACCAGGTGGTCGAATGGATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCg                                                                                                                             <  2:130459/148‑1 (MQ=255)                                gtCGAATGGATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTgg                                                                                                               >  8:261319/1‑149 (MQ=255)                                  cGAATGGATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCg                                                                                                             >  7:261174/1‑149 (MQ=255)                                    aaTGGATAGCCCAGGCGTTTCCGTCGTTGGTGGATATCGAGGTAGGCTTCGATTTCGACCATGGTGGGTATGCGGCTGTCACGGGCGCCGTGGTGGCGGCTCTTTAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGtt                                                                                                           <  5:204310/149‑1 (MQ=255)                                    aaTGGATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGtt                                                                                                           <  5:320985/149‑1 (MQ=255)                                       ggATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGa                                                                                                         >  3:171252/1‑148 (MQ=255)                                            gCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCAtct                                                                                                   <  8:261174/149‑1 (MQ=255)                                             cccACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCAtctc                                                                                                  >  2:86786/1‑149 (MQ=255)                                              ccACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTg                                                                                                          >  8:76995/1‑140 (MQ=255)                                              ccACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTg                                                                                                          <  7:76995/140‑1 (MQ=255)                                              ccACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCAtctc                                                                                                  <  4:219316/148‑1 (MQ=255)                                              ccACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCAtctc                                                                                                  >  3:219316/1‑148 (MQ=255)                                              ccACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCg                                                                                                 >  5:158882/1‑149 (MQ=255)                                              ccACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCg                                                                                                 >  7:53333/1‑149 (MQ=255)                                                aCGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGt                                                                                               >  2:93097/1‑149 (MQ=255)                                                        ccAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTc                                                                                        >  4:292771/1‑148 (MQ=255)                                                         cAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGt                                                                                                            <  5:208538/127‑1 (MQ=255)                                                         cAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGt                                                                                                            >  6:208538/1‑127 (MQ=255)                                                         cAGCGGTGGTGGATATGGAGGAAGGCGTCGATGTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTGTTGAACAGCCAGCCGTATACCTGCTGGCGGTCGAAGCGCGTGGGGTTGAGCGTGTCGGTGAggggc                                                                                        >  8:216868/1‑143 (MQ=255)                                                          aGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAg                                                                                     <  7:261319/149‑1 (MQ=255)                                                              ttGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCg                                                                                 <  8:57266/149‑1 (MQ=255)                                                                 gtggATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATAcctcct                                                                                                                                 <  8:60413/98‑1 (MQ=255)                                                                 gtggATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGt                                                                              >  8:55599/1‑149 (MQ=255)                                                                     atatCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGttctt                                                                          <  7:55599/149‑1 (MQ=255)                                                                        tCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTca                                                                        <  8:53333/148‑1 (MQ=255)                                                                         cGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGAGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTcag                                                                       >  7:61589/1‑148 (MQ=255)                                                                          gAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTcagca                                                                     <  4:171252/149‑1 (MQ=255)                                                                                 gCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGcc                                                              <  2:60259/149‑1 (MQ=255)                                                                                     cGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCaa                                                            <  7:216868/147‑1 (MQ=255)                                                                                      gATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAagc                                                          <  8:180961/148‑1 (MQ=255)                                                                                          tCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCg                                                                                                             <  7:221414/93‑1 (MQ=255)                                                                                          tCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCg                                                                                                             >  8:221414/1‑93 (MQ=255)                                                                                          tCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCca                                                     >  1:168786/1‑149 (MQ=255)                                                                                            gACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCca                                                     >  5:198873/1‑147 (MQ=255)                                                                                                     gCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGAAGGTAGCAAAGCAGCCAAAGGTCAAGCg                                          >  8:199376/1‑149 (MQ=255)                                                                                                       ggAGGCGGCTGTCACGGGCGCCCTGTTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCggg                                        <  8:111829/149‑1 (MQ=255)                                                                                                         aTGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTg                                      <  1:86786/149‑1 (MQ=255)                                                                                                           ctggctgttcaagagccgccaccagggcgcccgtgacagccAGCCGTATACCTCCTGGCGTTCGAAACGAGTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGa                                    >  8:100780‑M2/42‑149 (MQ=255)                                                                                                             GGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGt                                                                              <  6:10962‑M1/105‑1 (MQ=255)                                                                                                             GGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGt                                                                              >  5:10962‑M1/1‑105 (MQ=255)                                                                                                              gctgttcaagagccgccaccagggcgcccgtgacagccAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAg                                                                >  6:257096‑M2/39‑118 (MQ=255)                                                                                                              gctgttcaagagccgccaccagggcgcccgtgacagccAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAg                                                                <  5:257096‑M2/80‑1 (MQ=255)                                                                                                                TGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGTAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTg                               >  8:196573‑M1/1‑149 (MQ=255)                                                                                                                  TCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTg                               >  7:291941‑M1/1‑147 (MQ=255)                                                                                                                    aCGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCg                            <  7:199376/148‑1 (MQ=255)                                                                                                                      gggCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCGAGCGGGTGGACCTTGGCGATg                         >  5:223851/1‑149 (MQ=255)                                                                                                                         cgcCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTaa                      <  6:158882/149‑1 (MQ=255)                                                                                                                             cTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCt                  <  2:168786/149‑1 (MQ=255)                                                                                                                                   gcggcTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCTAGCGGGTGGACCTTGGCGATGTAACCCTGGTCgg            <  6:223851/149‑1 (MQ=255)                                                                                                                                         ctTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCTGGTCGGGCAGGt      >  6:145658/1‑149 (MQ=255)                                                                                                                                          ttGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCTGGTCGGGCAGGTc     >  1:121840/1‑149 (MQ=255)                                                                                                                                           tGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCTGGTCg             >  8:215944/1‑140 (MQ=255)                                                                                                                                           tGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCTGGTCg             <  7:215944/140‑1 (MQ=255)                                                                                                                                             aaCAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCTGGTCGGGCAGGTCGTa  >  2:27915/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                              CGATGGCGGTGGCCAATGAGGGCACCAGGTGGTCGAATGGATAGCCCACGCGTTTCCAGCGTTGGTGGATATCGAGGAAGGCTTCGATTTCGACCATGGTGCGGATGCGGCTGTCACGGGCGCCCTGGTGGCGGCTCTTGAACAGCCAGCCGTATACCTCCTGGCGTTCGAAACGACTGGCGTTGATCATCTCGGTCAGTGTCGAGCTCGGGTTCTTCAGCAGGTAGCCAAGCAGCCACAGGTCCAGCGGGTGGACCTTGGCGATGTAACCCTGGTCGGGCAGGTCGTA  >  NC_002947/1206447‑1206735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.