New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1616849	38 (0.750)	6 (0.120)	4/246	NT	14.2%	coding (410/1515 nt)	PP_1416	tricarboxylate transport protein TctA
	?	NC_002947	= 1616879	36 (0.750)					coding (380/1515 nt)	PP_1416	tricarboxylate transport protein TctA

GAGCGGCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTC  >  NC_002947/1616733‑1616994                                                                                                                                                   |                                                                                                                    gagCGGCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtg                                                                                                                   <  7:289023‑M2/149‑3 (MQ=255)    cGGCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggc                                                                                                                 <  6:245287‑M2/148‑5 (MQ=255)     ggCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcga                                                                                                               >  4:299502‑M2/1‑143 (MQ=255)          tGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAg                                                                                                          <  8:289023/149‑1 (MQ=255)          tGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAg                                                                                                          <  6:47659/149‑1 (MQ=255)                      gTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATgaac                                                                                              <  6:275839/149‑1 (MQ=255)                      gTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATgaac                                                                                              <  5:245287/149‑1 (MQ=255)                         ggttGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGGACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATgaacgaa                                                                                           <  8:89903/147‑1 (MQ=255)                          tttGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcga                                                                                                               <  8:145509‑M2/128‑7 (MQ=255)                          tttGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcga                                                                                                               >  7:145509‑M2/1‑122 (MQ=255)                                aCCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAgg                                                                                    >  3:287958/1‑149 (MQ=255)                                             cccAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCcgacagcgacag                                                                       <  4:287958/149‑1 (MQ=255)                                               cAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAggg                                                                     <  5:285570/149‑1 (MQ=255)                                                aaCGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATgaac                                                                                              >  6:272061/1‑123 (MQ=255)                                                aaCGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATgaac                                                                                              <  5:272061/123‑1 (MQ=255)                                                         aTGTCGAACACCATCAGAACAAAGTACTCCGCCGGGCCGACGGAGATGGCACATTTCGCCAGCAGAGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGc                                                           <  2:307285/149‑1 (MQ=255)                                                             cGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCcgacag                                                                             >  1:82175/1‑127 (MQ=255)                                                             cGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCcgacag                                                                             <  2:82175/127‑1 (MQ=255)                                                              gAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCg                                                             >  8:226225/1‑142 (MQ=255)                                                              gAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCg                                                             <  7:226225/142‑1 (MQ=255)                                                                 cacCATCAGCGCAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCt                                                   >  8:178467/1‑149 (MQ=255)                                                                          cacaAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCa                                          >  2:298299/1‑149 (MQ=255)                                                                            caAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATc                                        <  6:54282/149‑1 (MQ=255)                                                                            caAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATc                                        >  2:287734/1‑149 (MQ=255)                                                                             aaaGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCg                                       <  7:178467/149‑1 (MQ=255)                                                                              aaGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCgg                                      <  1:247459/149‑1 (MQ=255)                                                                              aaGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCgg                                      >  6:280988/1‑149 (MQ=255)                                                                              aaGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGAAGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCgg                                      <  7:83798/149‑1 (MQ=255)                                                                               aGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCggg                                     >  5:290789/1‑149 (MQ=255)                                                                                 tACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTa                                   <  1:287734/149‑1 (MQ=255)                                                                                             ccGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGggt                       >  7:164646/1‑149 (MQ=255)                                                                                                          cccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGcc                                                          >  7:164929/1‑101 (MQ=255)                                                                                                          cccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGcc                                                          <  8:164929/101‑1 (MQ=255)                                                                                                          cccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTc          <  6:290789/149‑1 (MQ=255)                                                                                                           ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgttgatggtgttcgccatcgtcgcgttgggtggcatggccggtgacaaaccactgaaaaccttca         <  8:161257‑M2/149‑109 (MQ=255)                                                                                                           ccATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgttgatggtgttcgccatcgtcgcgttgggtggcatggccggtgacaaaccactgaaaaccttca         <  6:217080‑M2/149‑109 (MQ=255)                                                                                                             aTTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgttgatggtgttcgccatcgtcgcgttgggtggcatggccggtgacaaaccactgaaaaccttcatt       >  5:217080‑M2/1‑39 (MQ=255)                                                                                                             aTTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgttgatggtgttcgccatcgtcgcgttgggtggcatggccggtgacaaaccactgaaaaccttcatt       >  7:161257‑M2/1‑39 (MQ=255)                                                                                                             aTTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgctgatggtgttcgccatcgtcgcgttgggtggcatggccggtgacaaaccactgaaaaccttcatt       <  4:147162‑M2/149‑111 (MQ=255)                                                                                                             aTTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGCCGGTCGAg       >  7:138765/1‑149 (MQ=255)                                                                                                              tttCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAgg      <  5:280988/149‑1 (MQ=255)                                                                                                                tCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGc     <  8:164646/148‑1 (MQ=255)                                                                                                                 cGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGtggcgaaatgggccatcgccttcggcccggcggagtactttgtgctgatggtgttcgccatcgtcgcgttgggtggcatggccggtgacaaaccactgaaaaccttcattgccg   <  3:162128‑M2/149‑115 (MQ=255)                                                                                                                             ggCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTa                                   >  6:195448/1‑105 (MQ=255)                                                                                                                             ggCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTa                                   <  5:195448/105‑1 (MQ=255)                                                                                                                                      cACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTc  >  6:329123/1‑129 (MQ=255)                                                                                                                                      cACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTc  <  5:329123/129‑1 (MQ=255)                                                                                                                                            gCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGggtg                      <  6:328873/103‑1 (MQ=255)                                                                                                                                            gCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGggtg                      >  5:328873/1‑103 (MQ=255)                                                                                                                                                   |                                                                                                                    GAGCGGCAATGAAGGTTTTCAGTGGTTTGTCACCGGCCATGCCACCCAACGCGACGATGGCGAACACCATCAGCACAAAGTACTCCGCCGGGCCGAAGGCGATGGCCCATTTCGCCAGCAGCGGGGCGAACAGCACCATGCCGCAGGTGGCGATGAAGGCGCCGATGAACGAACTCCAGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTC  >  NC_002947/1616733‑1616994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.