New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3051679 =	67 (1.330)	3 (0.060)	3/248	NT	5.5%	coding (379/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3051750 =	39 (0.810)					coding (450/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

CCGACAACGTCCCGGCACTGATCGCTTACCTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTGGCGAAGTGGTGGGTATCTTC  >  NC_002947/3051602‑3051897                                                                                                                                                     |                                                                                                                                                    cgttgatattggtctcggcgaactcgaacgtcacgctctcccccgccagtgcccgcgccacatagccttccaggcgcTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAg                                                                                                                                                     >  4:274125‑M1/78‑149 (MQ=255)  gttgatattggtctcggcgaactcgaacgtcacgctctcccccgccagtgcccgcgccacatagccttccaggcgcTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAgc                                                                                                                                                    >  6:186830‑M1/77‑149 (MQ=255)                          ttACCTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACAAGCGCCTGGAAGGCTATGTGGctcgtg                                                                                                                            >  8:249574/1‑147 (MQ=255)                             ccTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAg                                                                                                                                                     >  6:327715/1‑121 (MQ=255)                             ccTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAg                                                                                                                                                     <  5:327715/121‑1 (MQ=255)                             ccTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCAc                                                                                                                         >  8:137785/1‑149 (MQ=255)                              cTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCa                                                                                                                          >  7:10668/1‑147 (MQ=255)                              cTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCa                                                                                                                          <  8:10668/147‑1 (MQ=255)                              cTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACt                                                                                                                        >  7:162803/1‑149 (MQ=255)                                    gCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTAtgtg                                                                                                                                   >  1:266960/1‑132 (MQ=255)                                    gCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTAtgtg                                                                                                                                   <  2:266960/132‑1 (MQ=255)                                     ccGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCgggg                                                                                                                 >  1:56300/1‑149 (MQ=255)                                      cGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCgggg                                                                                                                 >  2:307182/1‑148 (MQ=255)                                             gTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGc                                                                                                           <  4:63818/147‑1 (MQ=255)                                              tCTACGAATTCACCAACAAGGTTTACGAAGAGTTGTATTGATGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTg                                                                                                        <  7:249574/149‑1 (MQ=255)                                                tACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGATATGTGGCGCGGGCACTGGCGGGGGAGAGGGTGag                                                                                                      >  8:155346/1‑148 (MQ=255)                                                  cGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGa                                                                                                       <  1:307182/146‑1 (MQ=255)                                                  cGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGa                                                                                                       <  4:96175/146‑1 (MQ=255)                                                    aaTTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTc                                                                                                  >  5:280688/1‑149 (MQ=255)                                                      ttCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGa                                                                                                <  6:10105/149‑1 (MQ=255)                                                       tCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAg                                                                                               >  8:63891/1‑149 (MQ=255)                                                        cacaAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGt                                                                                              >  3:112268/1‑149 (MQ=255)                                                         aCCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCgg                                                                                                                   >  6:59911/1‑127 (MQ=255)                                                         aCCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCgg                                                                                                                   <  5:59911/127‑1 (MQ=255)                                                           caacaaGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTAtgtg                                                                                                                                   <  7:60340/109‑1 (MQ=255)                                                           caacaaGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTAtgtg                                                                                                                                   >  8:60340/1‑109 (MQ=255)                                                            aacaaGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGc                                                                                          >  8:85557/1‑149 (MQ=255)                                                             acaaGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGcc                                                                                         >  5:260655/1‑149 (MQ=255)                                                             acaaGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGcc                                                                                         <  2:262914/149‑1 (MQ=255)                                                              caaGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCg                                                                                        <  7:137785/149‑1 (MQ=255)                                                                aGGTTTAAGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCAATACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCgac                                                                                         >  8:296267/1‑144 (MQ=255)                                                                 ggTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCgaga                                                                                     <  4:112268/149‑1 (MQ=255)                                                                   tttACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGcgcg                                                                                                                              >  7:11072/1‑106 (MQ=255)                                                                   tttACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGcgcg                                                                                                                              <  8:11072/106‑1 (MQ=255)                                                                        gAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGtt                                                                                                   >  6:130161/1‑128 (MQ=255)                                                                        gAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGtt                                                                                                   <  5:130161/128‑1 (MQ=255)                                                                         aaactgGGTATTGCTGGCCGCATGGCGGGATGCTGGGCCAGTGGCTTCGCGACGCCCACATCGAGCAGCACTAACAGCGGCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATc                                                                             >  7:155346‑M1/7‑149 (MQ=255)                                                                            gctggtagtgctgctcgctgtgggcctcgcgcaggctctggcccagcatcacgccatgcggccagcaataccaGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAAc                                                                          >  6:186830‑M2/74‑149 (MQ=255)                                                                            agTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTc                                                                                                  >  8:86661/1‑125 (MQ=255)                                                                            agTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTc                                                                                                  <  7:86661/125‑1 (MQ=255)                                                                             ctggtagtgctgctcgctgtgggcctcgcgcaggctctggcccagcatcacgccatgcggccagcaataccaGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACg                                                                         >  4:274125‑M2/73‑149 (MQ=255)                                                                              TGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGc                                                                                                           >  6:29608‑M1/1‑114 (MQ=255)                                                                              TGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGc                                                                                                           <  5:29608‑M1/114‑1 (MQ=255)                                                                              TGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACg                                                                         >  8:162803‑M1/1‑148 (MQ=255)                                                                                            gctgtgggcctcgcgcaggctctggcccagcatcacgccatgcggccagcaataccaGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTAc                                                           <  3:274125‑M2/91‑1 (MQ=255)                                                                                                 gCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACAtgct                                                      <  6:260655/148‑1 (MQ=255)                                                                                                          tGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGAGTGCCGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTAc                                            >  1:260194/1‑149 (MQ=255)                                                                                                              ccAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTAGGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTAc                                        <  7:70831/149‑1 (MQ=255)                                                                                                                               cccACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGt                       <  6:280688/149‑1 (MQ=255)                                                                                                                                ccACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTg                      >  2:69368/1‑149 (MQ=255)                                                                                                                                            gcaCTACCAGCGCCTGGAAGGCTATGTGGCGCGTGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTGGCGAAGtggtgg          <  4:101408/149‑1 (MQ=255)                                                                                                                                                taccaGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTGGCGAAGTGGTGGGTAt      >  4:442‑M2/6‑149 (MQ=255)                                                                                                                                                taacaGCGCCTGGAAGGCTATGTCGCGCGGGCACTGGCGGGGGAGAGCGTGACGATCGAGTTCCCCGAGACCAATATCAACGGCCATGAACGCTACATGCTGCGTTCCTACGAACCGAACCGCCTGGCCAGTGGCGAAGTGGTGGGTAt      >  2:158130‑M2/6‑149 (MQ=255)                                                                                                                                                  ccaGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTGGCGAAgtg              >  4:208526‑M2/4‑139 (MQ=255)                                                                                                                                                  ccaGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTGGCGAAgtg              <  3:208526‑M2/136‑1 (MQ=255)                                                                                                                                                  ccaGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTGGCGAAGTGGTGGGTATCt    >  7:37667‑M2/4‑149 (MQ=255)                                                                                                                                                    aGCGCCTGGTAGGCTATGGGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGTCCAGGACCTCTACATGCTGCGTTCCTACGTAGCGAACCGCCTGGCCAGTGGCGAAGGGGTGGGTATCTTc  <  2:260194‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCGACAACGTCCCGGCACTGATCGCTTACCTGAACGCCGATCTGGTCTACGAATTCACCAACAAGGTTTACGAAGAGTGGTATTGCTGGCCGCATGGCGTGATGCTGGGCCAGAGCCTGCGCGAGGCCCACAGCGAGCAGCACTACCAGCGCCTGGAAGGCTATGTGGCGCGGGCACTGGCGGGGGAGAGCGTGACGTTCGAGTTCGCCGAGACCAATATCAACGGCCAGGAACGCTACATGCTGCGTTCCTACGTACCGAACCGCCTGGCCAGTGGCGAAGTGGTGGGTATCTTC  >  NC_002947/3051602‑3051897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.