New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3926238	39 (0.770)	3 (0.060)	3/240	NT	7.9%	coding (253/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha
	?	NC_002947	= 3926260	34 (0.730)					coding (231/1629 nt)	peaA	quinohemoprotein amine dehydrogenase subunit alpha

CATCGGTTTCGCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCA  >  NC_002947/3926118‑3926401                                                                                                                                                  |                                                                                                                                              cATCGGTTTCGCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CCGCCAGCGTTCCGGTGTCTTGCGCTGGtggct                                                                                                                                          <  8:284253‑M2/148‑6 (MQ=255)    cGGTTTCGCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAAAGATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGtggctgat                                                                                                                                       <  1:88349‑M2/149‑9 (MQ=255)       tttCGCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCgg                                                                                                                                   <  8:182341/149‑1 (MQ=255)          cGCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCt                                                                                                                                 <  7:230126/148‑1 (MQ=255)           gCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGtggctg                                                                                                                                         <  5:265124‑M2/139‑7 (MQ=255)           gCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGtggctg                                                                                                                                         >  6:265124‑M2/1‑133 (MQ=255)            cTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCtata                                                                                                                              <  5:131052/149‑1 (MQ=255)             tGGGCGCCAGGCCCTGTTTCTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCATTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAg                                                                                                                             >  4:171244/1‑149 (MQ=255)                gcgcCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGgtg                                                                                                                          <  2:88349/149‑1 (MQ=255)                gcgcCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGgtg                                                                                                                          <  1:222570/149‑1 (MQ=255)                             tttGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCg                                                                                                              <  5:36253/148‑1 (MQ=255)                                      cAGGTATTTGAACAGCGTGCGAC‑GATGGTCGTCGCTGATCTGAAGGCCATGCATCACCTGGATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTGGTTGCCTTCGGGGATATGGc                                                                                                    <  1:323649/149‑1 (MQ=255)                                         gTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCa                                                                                                   <  2:179191/147‑1 (MQ=255)                                         gTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCa                                                                                                   >  1:179191/1‑147 (MQ=255)                                            tttGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCAcccc                                                                                               <  2:124464/148‑1 (MQ=255)                                            tttGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCa                                                                                              >  2:7816/1‑149 (MQ=255)                                                  cAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCATAGCACCCCCCATACGGGTGTTTTGCGGGGTTGGATGAGGCGGATATAGGTGACTTTGCATGGGGGGATATGGCCCCCCATGCa                                                                                          >  1:96135/1‑149 (MQ=255)                                                  cAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACt                                                                                        >  7:60372/1‑149 (MQ=255)                                                          gac‑gaTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTg                                                                                 >  1:43976/1‑148 (MQ=255)                                                          gac‑gaTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTg                                                                                 >  5:309135/1‑148 (MQ=255)                                                            c‑gaTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCaa                                                                              >  1:86394/1‑149 (MQ=255)                                                               aTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTc                                                                                   <  6:243258/142‑1 (MQ=255)                                                               aTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTc                                                                                   >  5:243258/1‑142 (MQ=255)                                                               aTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCaa                                                                              >  7:305041/1‑147 (MQ=255)                                                               aTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACa                                                                            <  2:86394/149‑1 (MQ=255)                                                               aTCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACa                                                                            <  1:7816/149‑1 (MQ=255)                                                                     gtcgCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCg                                                                      <  8:60372/149‑1 (MQ=255)                                                                      tcgCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCgg                                                                     <  6:309135/149‑1 (MQ=255)                                                                         cTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGatat                                                                                                       <  7:184167/112‑1 (MQ=255)                                                                         cTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGatat                                                                                                       >  8:184167/1‑112 (MQ=255)                                                                         cTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGcc                                                                  <  8:305041/149‑1 (MQ=255)                                                                                 aaGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGc                                                              <  2:96135/145‑1 (MQ=255)                                                                                      cATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGgccgc                                                      >  5:32957/1‑148 (MQ=255)                                                                                        tGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCAt                                                   <  3:171244/149‑1 (MQ=255)                                                                                               ccTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCGCTGCTCGGCCGCCATGGCCTgg                                            <  6:119753/149‑1 (MQ=255)                                                                                               ccTGCAGGCGGGCGCCGCTCAG‑‑CAGCCCGCCTTCCGGGGTCGTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTgg                                            <  6:231222/149‑1 (MQ=255)                                                                                                              tGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGcgcg                             <  3:147348/149‑1 (MQ=255)                                                                                                                 tcat‑‑caGCCAGCCTTCCGGTGTCTTGCGCTGGtggctgatgagcatcgcccgcatgcaggtgatgcatggccttcagatcagcgacgacgatcgtcgcacgctggtcaaatacctggccgacaaacagggcctg                                         <  2:18422‑M2/134‑103 (MQ=255)                                                                                                                 tcat‑‑caGCCAGCCTTCCGGTGTCTTGCGCTGGtggctgatgagcatcgcccgcatgcaggtgatgcatggccttcagatcagcgacgacgatcgtcgcacgctggtcaaatacctggccgacaaacagggcctg                                         >  1:18422‑M2/1‑32 (MQ=255)                                                                                                                   at‑‑caGCCAGCCTTCCGGTGTCTTGCGCTGGtggctgatgagcatcgcccgcatgcaggtgatgcatggacttcagatcagcgacgacgatcgtcacacgctggtcaaatacctggccgacaaacagggcctggcgcccagcgaaaccga                        <  7:65513‑M2/149‑120 (MQ=255)                                                                                                                    t‑‑caGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGTGATATGGCACCCCATGCACTTGTTCTGCAACAGGCGCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCgcggcggcg                       <  7:83977/149‑1 (MQ=255)                                                                                                                    t‑‑caGCCAGCCTTCCGGGTTCTTGCTCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCgcggcggcg                       <  7:88380/149‑1 (MQ=255)                                                                                                                                            gcgcTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCa  <  7:19521/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              CATCGGTTTCGCTGGGCGCCAGGCCCTGTTTGTCGGCCAGGTATTTGACCAGCGTGCGAC‑GATCGTCGTCGCTGATCTGAAGGCCATGCATCACCTGCATGCGGGCGATGCTCAT‑‑CAGCCAGCCTTCCGGTGTCTTGCGCTGGTGGCTGATGCGGCTATAGGTGTCGTTGCCTTCGGGGATATGGCACCCCATGCACTTGTTCTGCAACAGGCTCGGGCCCTGCTCGGCCGCCATGGCCTGGGTGCTCAGCAGCGCGGCGGCGACCAGCGCCAGTTTGCCCGCA  >  NC_002947/3926118‑3926401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.