New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4625506	43 (0.850)	3 (0.060)	3/242	NT	6.6%	intergenic (+4099/+465)	PP_5654/PP_4091	phosphotriesterase/transposase
	?	NC_002947	= 4625534	45 (0.950)					intergenic (+4127/+437)	PP_5654/PP_4091	phosphotriesterase/transposase

TCACCTTCACAGACAACCAGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTCACCCGCACACGCTA  >  NC_002947/4625387‑4625681                                                                                                                                                     |                                                                                                                                                    tCACCTTCACAGACAACCAGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGAc                                                                                                                                                    >  1:18784‑M2/1‑148 (MQ=255)        cacaGACAACCAGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCGGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGAccagcgc                                                                                                                                              >  7:126213‑M2/1‑141 (MQ=255)        cacaGACAACCAGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGAccagcgc                                                                                                                                              >  5:123746‑M2/1‑141 (MQ=255)          caGACAACCAGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GCAACCAACAGCGCGGGCCTGCTGCAGTACAGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGaa                                                                                                                                           >  2:284383/1‑149 (MQ=255)               aaCCAGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGCAGAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTc                                                                                                                                        >  1:254024/1‑148 (MQ=255)               aaCCAGGGCAAGAAGCAGCAACTCGATTACACATACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCaa                                                                                                                                      >  4:197938/1‑149 (MQ=255)                   aGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCAc                                                                                                                                  <  8:124238/149‑1 (MQ=255)                    gggCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCAcc                                                                                                                                 >  4:25206/1‑149 (MQ=255)                       cAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTg                                                                                                                               >  3:97901/1‑148 (MQ=255)                            agcagcAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTGCCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGtactac                                                                                                                         <  7:186395/149‑1 (MQ=255)                              cagcaACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACgg                                                                                                                       <  3:97711/149‑1 (MQ=255)                                       gATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGaca                                                                                                              <  3:25206/149‑1 (MQ=255)                                           acacCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTg                                                                                                          >  1:28577/1‑149 (MQ=255)                                             acCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCa                                                                                                        >  4:135424/1‑149 (MQ=255)                                                 aCGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCAc                                                                                                       >  4:295689/1‑146 (MQ=255)                                                  cGACCCCACCGGCCACCTGCTCCGC‑GACACCCACAGCGCGGGCCTGCTGCACTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGa                                                                                                   <  8:240387/149‑1 (MQ=17)                                                  cGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGa                                                                                                   <  4:97901/149‑1 (MQ=255)                                                                  cTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCg                                                                                   >  2:16958/1‑149 (MQ=255)                                                                     cTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCggg                                                                                 <  2:254024/148‑1 (MQ=255)                                                                      tCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGt                                                                                >  2:156894/1‑148 (MQ=255)                                                                                  aaCAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGc                                                                                     >  5:331844/1‑132 (MQ=255)                                                                                  aaCAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGc                                                                                     <  6:331844/132‑1 (MQ=255)                                                                                   aCAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTc                                                                   <  1:16958/149‑1 (MQ=255)                                                                                   aCAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTc                                                                   <  1:156894/149‑1 (MQ=255)                                                                                     aGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGa                                                                 <  1:266280/149‑1 (MQ=255)                                                                                       cgcgGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAgc                                                               >  6:272246/1‑149 (MQ=255)                                                                                                 ctgcAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGt                                                     >  6:282125/1‑149 (MQ=255)                                                                                                   gcAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCAc                                                                                                       <  5:188784/97‑1 (MQ=255)                                                                                                   gcAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCAc                                                                                                       >  6:188784/1‑97 (MQ=255)                                                                                                   gcAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTg                                                    >  1:177600/1‑148 (MQ=255)                                                                                                    cAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTg                                                    <  3:295689/147‑1 (MQ=255)                                                                                                     aGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGAccagcgcgtcgtagcggtacagcagcaggcccgcagtgtaggtttcgctgagcagttgcccgttggggtcgtatgagtaatcgatttgatggatcttgcc                                                 <  8:115462‑M2/149‑101 (MQ=255)                                                                                                          cGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCAcgacga                                            <  3:135424/149‑1 (MQ=255)                                                                                                            cTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAgg                                          <  7:189810/149‑1 (MQ=255)                                                                                                              acgacgCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGAt                                                                      <  8:83941/119‑1 (MQ=255)                                                                                                              acgacgCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGAt                                                                      >  7:83941/1‑119 (MQ=255)                                                                                                               cgacgCGCGGGGCAATTTGCAGACCCTGCGGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTc                                        <  1:284383/148‑1 (MQ=255)                                                                                                                  cgcgCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCt                                      >  1:91552/1‑147 (MQ=255)                                                                                                                  cgcgCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCt                                      <  2:91552/147‑1 (MQ=255)                                                                                                                   gcgcTGGGCAATTTGCAGACCCTGGTGCTGCCCGAccagcgcgtcgtagcggtactgcagcaggcccgcgctgttggtttcgctgagcagttgcccgttggggtcgtaggtgtaatcgagttgctgcttcttgccctg                                              <  8:112312‑M2/138‑104 (MQ=255)                                                                                                                   gcgcTGGGCAATTTGCAGACCCTGGTGCTGCCCGAccagcgcgtcgtagcggtactgcagcaggcccgcgctgttggtttcgctgagcagttgcccgttggggtcgtaggtgtaatcgagttgctgcttcttgccctg                                              >  7:112312‑M2/1‑35 (MQ=255)                                                                                                                       tGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAg                                                                                                    <  4:170035/80‑1 (MQ=255)                                                                                                                       tGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAg                                                                                                    >  3:170035/1‑80 (MQ=255)                                                                                                                         ggCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCAccc                              >  5:282462/1‑148 (MQ=255)                                                                                                                           cAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAg                           <  7:150871/149‑1 (MQ=255)                                                                                                                              tttGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGc                         >  5:79489/1‑148 (MQ=255)                                                                                                                                  cAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAAc                     <  3:197938/148‑1 (MQ=255)                                                                                                                                  cAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACt                    <  6:79489/149‑1 (MQ=255)                                                                                                                                      cccTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTc                <  5:282125/149‑1 (MQ=255)                                                                                                                                        cTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTCAc              <  2:177600/149‑1 (MQ=255)                                                                                                                                           gTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTCAcc             <  2:28577/147‑1 (MQ=255)                                                                                                                                             gctgcCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTCACCCGca         >  6:115742/1‑149 (MQ=255)                                                                                                                                              ctgcCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTCACCCGca         <  4:34902/148‑1 (MQ=255)                                                                                                                                                    gACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTCACCCGCACACGCTa  <  5:272246/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TCACCTTCACAGACAACCAGGGCAAGAAGCAGCAACTCGATTACACCTACGACCCCAACGGGCAACTGCTCAGC‑GAAACCAACAGCGCGGGCCTGCTGCAGTACCGCTACGACGCGCTGGGCAATTTGCAGACCCTGGTGCTGCCCGACCAGCGCGAACTCAATCACCTGTACTACGGCAGCGGACACCTGCACCAGATCAACTTGAACGGCCGGGTGATCAGCGATTTCGAGCGCGATGCGGTGCACGACGAGGTCCTGCGCACCCAAGGCAAACTGGTCACCCGCACACGCTA  >  NC_002947/4625387‑4625681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.