| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5147701 = | NA (NA) | 3 (0.060) | 3/244 | NT | 15.0% | coding (806/1302 nt) | mscMB | miniconductance mechanosensitive channel protein |
| ? | NC_002947 | 5147725 = | 18 (0.360) | coding (830/1302 nt) | mscMB | miniconductance mechanosensitive channel protein | |||||
ACACGGTGAAAGTACAGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGCCAGGTGCAGCTACTGAGTGACTACCTGGCGGGCAAGCGCCAGGAACTGCAAAACTGGAACGAGGCGCTGGGGCCGGTGGC > NC_002947/5147578‑5147842 | ggtccgccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTg < 8:21604‑M2/2‑1 (MQ=255)acacGGTGAAAGTACAGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTg < 4:292686/149‑1 (MQ=255) gtccgccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTgc > 6:60856‑M2/147‑149 (MQ=255) gtccgccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTgc > 5:291546‑M2/147‑149 (MQ=255) gtccgccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTgc > 5:184053‑M2/147‑149 (MQ=255) ccgccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTgcgc < 3:177996‑M2/5‑1 (MQ=255) cgccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgttgatgaacaggcTgcgc < 2:187375‑M2/5‑1 (MQ=255) tGAAAGTACAGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCGGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGTCGCCGGCGTGCGCTTc < 4:190207/149‑1 (MQ=255) tGAAAGTACAGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTc < 7:33326/149‑1 (MQ=40) ccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTGCGCtt > 6:84674‑M2/142‑148 (MQ=255) ccaccggccccagcgcctcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTGCGCtt > 4:32878‑M2/142‑148 (MQ=255) aGTACAGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCa < 8:187664/149‑1 (MQ=38) aCAGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCAccc > 1:109243/1‑149 (MQ=35) aGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCcgc > 8:37208/1‑149 (MQ=34) aGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCcgc > 1:237934/1‑149 (MQ=34) aGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCAGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCcgc > 5:173628/1‑149 (MQ=21) cTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCAcgcgcg > 6:333257/1‑146 (MQ=21) ttCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCgaag > 2:207174/1‑148 (MQ=34) aaGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACa < 1:315810/149‑1 (MQ=34) gACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACa < 4:152219/147‑1 (MQ=34) gACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACa > 3:152219/1‑147 (MQ=34) cATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTg > 4:3600/1‑118 (MQ=34) cATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTg < 3:3600/118‑1 (MQ=34) cATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAgcgc > 8:89058/1‑148 (MQ=33) cATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGcc < 7:89058/149‑1 (MQ=33) cATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGcc > 4:179232/1‑149 (MQ=33) cGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCt > 5:212424/1‑147 (MQ=32) gtgtCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGa < 1:207174/148‑1 (MQ=32) tgtCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGc > 6:130565/1‑149 (MQ=31) ctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTGCGCt < 6:252052‑M2/6‑1 (MQ=255) ctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggcTGCGCt > 5:252052‑M2/66‑71 (MQ=255) gaggaagcgcacgccggcggcgtcgatgaacaggcTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGCCAGGTGCAGCTACTGAGt < 6:203793‑M2/56‑1 (MQ=255) gaggaagcgcacgccggcggcgtcgatgaacaggcTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGCCAGGTGCAGCTACTGAGt > 5:203793‑M2/36‑91 (MQ=255) aagcgcacgccggcggcgtcgatgaacaggcTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGCCAGGTGCAGCTACTGAGTGACTACCTGGCGGGCAAGCGCCAGGAACTGCAAAACTGGAACGAGGCGCTGGGGCCGGTGGc > 4:88159‑M2/32‑149 (MQ=255) | ACACGGTGAAAGTACAGAACTTCGACAAGACCATCGTGTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGCCAGGTGCAGCTACTGAGTGACTACCTGGCGGGCAAGCGCCAGGAACTGCAAAACTGGAACGAGGCGCTGGGGCCGGTGGC > NC_002947/5147578‑5147842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |