New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6099117 =	34 (0.680)	3 (0.060)	3/244	NT	9.5%	intergenic (‑29/‑60)	PP_5350/zwf	RpiR family transcriptional regulator/glucose 6‑phosphate 1‑dehydrogenase
	?	NC_002947	6099162 =	25 (0.520)					intergenic (‑74/‑15)	PP_5350/zwf	RpiR family transcriptional regulator/glucose 6‑phosphate 1‑dehydrogenase

CACGTGGTCGGCCACTTTCAGTTCCGATTTGCGCAGCAAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTCGCGAGGCCCGTCTGAACCCTGCCGTG  >  NC_002947/6099014‑6099305                                                                                                                                                     |                                                                                                                                                 caCGTGGTCGGCCACTTTCAGTTCCGATTTGCGCAGCAAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGc                                                                                                                                                  >  5:69678/1‑149 (MQ=255)   gccggaagcaatttgtgcagggccagatcaccggtgccgccgaagaccagaatgtcgcaaggaatagtcaaaccaccactctccacgttcgtttaactgggCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGccc                                                                                                                                                >  3:234153‑M1/102‑149 (MQ=255)          ggCCACTTTCAGTTCCGATTTGCGCAGCAAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑Taa                                                                                                                                         >  4:202180/1‑148 (MQ=255)               cTTTCAGTTCCGATTTGCGCAGCAAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAaacgaac                                                                                                                                   >  3:115990/1‑149 (MQ=255)                tttCAGTTCCGATTTGCGCAGCAAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAaacgaacg                                                                                                                                  >  7:11047/1‑149 (MQ=255)                tttCAGTTCCGATTTGCGCAGCAAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAaacgaacg                                                                                                                                  >  6:161873/1‑149 (MQ=255)                    cagggccagatcaccggtgccgccgaagaccagaatgtcgcaaggaatagtcaaaccaccactctccacgttcgtttaactgggCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGcc                                                                                                                                                 <  5:5373‑M1/47‑1 (MQ=255)                    cagggccagatcaccggtgccgccgaagaccagaatgtcgcaaggaatagtcaaaccaccactctccacgttcgtttaactgggCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGcc                                                                                                                                                 >  6:5373‑M1/85‑131 (MQ=255)                                  cagcaAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGa                                                                                                                <  4:115990/149‑1 (MQ=255)                                   agcaAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGAc                                                                                                               <  6:69678/149‑1 (MQ=255)                                         tGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGa                                                                                                                >  5:16091/1‑142 (MQ=255)                                         tGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGa                                                                                                                <  6:16091/142‑1 (MQ=255)                                             gcgATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGc                                                                                                     <  5:161873/149‑1 (MQ=255)                                                    ggCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCtt                                                                                                       <  2:16142/140‑1 (MQ=255)                                                    ggCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCtt                                                                                                       >  1:16142/1‑140 (MQ=255)                                                    ggCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTc                                                                                              >  6:223295/1‑149 (MQ=255)                                                    ggCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTc                                                                                              >  4:43856/1‑149 (MQ=255)                                                                       ttCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCACAGT‑TAAAAGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGAGATTCTGGTCTTCggcggctacgg                                                                           >  3:59579/1‑144 (MQ=255)                                                                                 ggACTCGTTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGGGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGcc                                                                 <  3:202180/149‑1 (MQ=255)                                                                                 ggACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTATGGTCTTCGTCGGCACAGGTGATCTGGc                                                                  >  4:31557/1‑148 (MQ=255)                                                                                  gACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGccc                                                                <  8:11047/149‑1 (MQ=255)                                                                                     tCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTTGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTg                                                              >  5:318212/1‑148 (MQ=255)                                                                                       ggTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGca                                                            >  6:283035/1‑148 (MQ=255)                                                                                                 ggCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTc                                                 <  5:223295/149‑1 (MQ=255)                                                                                                     gggcgggttggcgtccatgtagtataactacaagaaagctacaacccgCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGgc                                             >  3:234153‑M2/49‑149 (MQ=255)                                                                                                      ggcgggttggcgtccatgtagtataactacaagaaagctacaacccgCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTg                                                              >  6:5373‑M2/48‑131 (MQ=255)                                                                                                      ggcgggttggcgtccatgtagtataactacaagaaagctacaacccgCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTg                                                              <  5:5373‑M2/84‑1 (MQ=255)                                                                                                       ccGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGTATAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGgcg                                            >  1:79729/1‑149 (MQ=255)                                                                                                         GGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCgg                                              >  5:237705‑M1/1‑144 (MQ=255)                                                                                                         GGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCgg                                              <  6:237705‑M1/144‑1 (MQ=255)                                                                                                                 gCTTTCTTGTAGTTATACTACATGGACGCCAACACGCCCTGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGAGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCt                                 <  6:306609/149‑1 (MQ=255)                                                                                                                         gTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTcgc                          >  3:60009/1‑148 (MQ=255)                                                                                                                           aGTTATACTACATTGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTTATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTCGCGa                        <  3:31557/148‑1 (MQ=255)                                                                                                                                     cATGGACGACAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGCTTTGACTATTCCTTGCGACATACTGGTCTTCGGCGGCACCGGTGATCt                                                                     >  5:315942/1‑93 (MQ=255)                                                                                                                                            gCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTCGCGAGGCCCGTCTGAACCCTGc      >  4:184027/1‑149 (MQ=255)                                                                                                                                             ccAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACAGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACGACCTTTTTCGCGAGGACCGTCTGAACCCTGcc     >  7:298851/1‑149 (MQ=255)                                                                                                                                              caacccgCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTCGCGAGGCCCGTCTGAACCCTGCCg    >  1:5447‑M2/8‑149 (MQ=255)                                                                                                                                               aacccgCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTg                                                                         >  3:17073‑M2/7‑79 (MQ=255)                                                                                                                                               aacccgCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTg                                                                         <  4:17073‑M2/73‑1 (MQ=255)                                                                                                                                                acccgCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGTCGCTCTACCACCTGTTTCGCGAGGCCCGTCTGAACCCTGCCGTg  <  4:60009‑M2/144‑1 (MQ=255)                                                                                                                                                    gCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTCGCGAGGcc                    <  2:197540‑M2/126‑1 (MQ=255)                                                                                                                                                    gCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTCGCGAGGcc                    >  1:197540‑M2/2‑127 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CACGTGGTCGGCCACTTTCAGTTCCGATTTGCGCAGCAAGTGGCGCGATTGGGCGATATGTTGCAACAGATTCACAGGCGGGACTCGGTTATGATCGGCTTGCCGGGTTGTAGCTTTCTTGTAGTTATACTACATGGACGCCAACCCGCCCAGT‑TAAACGAACGTGGAGAGTGGTGGTTTGACTATTCCTTGCGACATTCTGGTCTTCGGCGGCACCGGTGATCTGGCCCTGCACAAATTGCTTCCGGCGCTCTACCACCTGTTTCGCGAGGCCCGTCTGAACCCTGCCGTG  >  NC_002947/6099014‑6099305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.