| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5206022 = | 28 (0.970) | 4 (0.150) | 4/276 | 3.4 | 13.2% | coding (411/1209 nt) | PP_4586 | hypothetical protein |
| ? | NC_002947 | 5206064 = | 26 (0.940) | coding (369/1209 nt) | PP_4586 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAGCCTCAGCTACCGTGTGCAACTGGACCAGAAGCTGGCCAGCGGCGCCTATTCATCACGCATCACCCCGCACTGGGCCCTGTTCCTCGGCGACCAGCTGATACCCCCTGCGCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5206173‑5206022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcAGGGGGTATCAGCTGGTCGCCGAGGAACAGGGCCCAGTGCGGGGTGATGCGTGATGAATAGGCGCCGCTGGCCAGCTTCTGGTCCAGTTGCACACGGTAGCTGAGGCTGGTCTTGCCGGCCGCTGGCTGCCAGATACCACGTTGC > NC_002947/5206064‑5206208 CCAGCCTCAGCTACCGTGTGCAACTGGACCAGAAGCTGGCCAGCGGCGCCTATTCATCACGCAGCACCCCGCACTGGGCCCTGTTCCTCGGCGACCATCTGATACCCCCTGCGCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGC < 8:124272/148‑1CCAGCCTCAGCTACCGTGTGCAACTGGACCAGAAGCGGGCCAGCGGCGCGTATTCATCACGCATCACCCCGCACTGGGCCCTGTTCCTCGGCGACCAGCTGATACCCCCTGCGCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGC < 7:54637/148‑1 CAGCTGATACCCCCTGCGCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGCGCGCCGGGGGTATCAGCTGGTCGCCGAGGAACAGGGCCCAGTGCGGGGTGATGCGTGATGAATAGGCGCCGCTGGCCAGCTTCTGGTCCAGTTGC > 8:78583/1‑148 CCCTGCGCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGCGCGCAGGGGGTATCAGCTGGTCGCCGAGGAACAGGGCCCAGTGCGGGGTGATGCGTGATGAATAGGCGCCGCTGGCCAGCTTCCGGTCCAGTTGCACACGGTAGCT > 5:33383/1‑148 GCGCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGCGCGCAGGGGGTATCAGCTGGTCGCCGAGGAACAGGGCCCAGTGCGGGGTGATGCGTGATGAATAGGCGCCGCTGGCCAGCTTCTGGTCCAGTTGCACACGGTAGCTGAGG > 3:59304/1‑148 GCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGCGCGCAGGGGGTATCAGCTGGTCGCCGAGGAACAGGGCCCAGTGCGGGGTGATGCGTGATGAATAGGCGCCGCTGGCCAGCTTCTGGTCCAGTTGCACACGGTAGCTGAGGCT > 2:11355/1‑148 CGCAGGGGGTATCAGCTGGTCGCCGAGGAACAGGGCCCAGTGCGGGGTGATGCGTGATGAATAGGCGCCGCTGGCCAGCTTCTGGTCCAGTTGCACACGGTAGCTGAGGCTGGTCTTGCCGGCCGCTGGCTGCCAGATACCACGTTGC < 4:153475/148‑1 CCAGCCTCAGCTACCGTGTGCAACTGGACCAGAAGCTGGCCAGCGGCGCCTATTCATCACGCATCACCCCGCACTGGGCCCTGTTCCTCGGCGACCAGCTGATACCCCCTGCGCGCCTCGACCAGCAGGATGGTACCGAGCTGGTGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5206173‑5206022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcAGGGGGTATCAGCTGGTCGCCGAGGAACAGGGCCCAGTGCGGGGTGATGCGTGATGAATAGGCGCCGCTGGCCAGCTTCTGGTCCAGTTGCACACGGTAGCTGAGGCTGGTCTTGCCGGCCGCTGGCTGCCAGATACCACGTTGC > NC_002947/5206064‑5206208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |