New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 573484428 (0.970)5 (0.180) 5/276 3.0 16.5% coding (820/1533 nt) hutH histidine ammonia‑lyase
?NC_002947 = 5734851 24 (0.870)coding (813/1533 nt) hutH histidine ammonia‑lyase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACATCACCTTCGGCAGCGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5734692‑5734844
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcgcaCAAGAACTGCGACAAGGTCCAGGACCCGTACTCGCTGCGCTGCCAGCCGCAGGTCATGGGTGCCTGCCTGACCCAGCTGCGTCAGGCCGCCGAGGTACTGGGCATCGAAGCCAACGCTGTGTCGGACAACCCGCTGGTGTTCG  <  NC_002947/5734851‑5734709
                                                                                                                                                                                                                                                                                                        
CACATCACCTTCGGCAGCGCACACCAGCGGGGTGTCCGACCCAGCGTGGGCGTCGATGCCCAGTACCTCGGCAGCCTGACGCAGCTGGGGCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTG                                                                                                                                                      <  6:157947/148‑1
                   AACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCACAAGAACTGCGACA                                                                                                                                   <  4:116650/148‑1
                     CACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCACAAGAACTGCGACAAG                                                                                                                                 <  8:96514/148‑1
                      ACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCACAAGAACTGCGACAAGG                                                                                                                                <  2:173748/148‑1
                                                                                                   ACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCACAAGAACTGCGACAAGGT                                                                                                                               >  4:28956/1‑72
                                                                                                    CCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCACAAGAACTGCGACAAGGTC                                                                                                                              <  3:28956/72‑1
                                                                                                                                                     CGCACAAGAACTGCGACAAGGTCCAGGACCCGTACTCGCTGCGCTGCCAGCCGCAGGTCATGGGTGCCTGCCTGACCCAGCTGCGTCAGGCCGCCGAGGTACTGGGCATCGAAGCCAACGCTGTGTCGGACAACCCGCTGGTGTTCG  <  3:154620/147‑1
                                                                                                                                                     CGCACAAGAACTGCGACAAGGTCCAGGACCCGTACTCGCTGCGCTGCCAGCCGCAGGTCATGGGTGCCTGCCTGACCCAGCTGCGTCAGGCCGCCGAGGTACTGGGCATCGAAGCCAACGCTGTGTCGGACAACCCGCTGGTGTTC   <  2:62440/146‑1
                                                                                                                                                     CGCACAAGAACTGCGACAAGGTCCAGGACCCGTACTCGCTGCGCTGCCAGCCGCAGGTCATGGGTGCCTGCCTGACCCAGCTGCGTCAGGCCGCCGAGGTACTGGGCATCGAAGCCAACGCTGTGTCGGACAACCCGCTGGTGTTC   <  6:143251/146‑1
                                                                                                                                                                                                                                                                                                        
CACATCACCTTCGGCAGCGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5734692‑5734844
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcgcaCAAGAACTGCGACAAGGTCCAGGACCCGTACTCGCTGCGCTGCCAGCCGCAGGTCATGGGTGCCTGCCTGACCCAGCTGCGTCAGGCCGCCGAGGTACTGGGCATCGAAGCCAACGCTGTGTCGGACAACCCGCTGGTGTTCG  <  NC_002947/5734851‑5734709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.