New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5734844	28 (0.970)	5 (0.180)	5/276	3.0	16.5%	coding (820/1533 nt)	hutH	histidine ammonia‑lyase
	?	NC_002947	= 5734851	24 (0.870)					coding (813/1533 nt)	hutH	histidine ammonia‑lyase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCGGCAGCGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACACGCGCATCGAAGGGCGAGCGCGAGCCCAATGCGGCTTCGACG  >  NC_002947/5734701‑5734986                                                                                                                                                |                                                                                                                                               ttCGGCAGCGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTc                                                                                                                                            >  7:131163/1‑148 (MQ=255)    ggCAGCGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCtt                                                                                                                                          <  5:20759/147‑1 (MQ=255)         cGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcg                                                                                                                                     >  3:154620/1‑147 (MQ=255)          gAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcg                                                                                                                                     >  2:62440/1‑146 (MQ=255)          gAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcg                                                                                                                                     >  6:143251/1‑146 (MQ=255)                cAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcgacagcgac                                                                                                                             >  6:82268/1‑148 (MQ=255)                 aGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcgccagcgaca                                                                                                                            >  8:140127/1‑148 (MQ=255)                      gTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCCTGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCg                                                                                                                       >  3:107849/1‑148 (MQ=255)                          tCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTg                                                                                                                    <  8:133025/147‑1 (MQ=255)                           ccGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGa                                                                                                                  <  2:34529/148‑1 (MQ=255)                                acaGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGc                                                                                                             >  8:131900/1‑148 (MQ=255)                                     gTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCcagc                                                                                                        <  4:77594/148‑1 (MQ=255)                                                   ccAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCa                                                                                          >  3:81118/1‑148 (MQ=255)                                                   ccAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCa                                                                                          >  1:33284/1‑148 (MQ=255)                                                       tACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGcc                                                                                      <  3:79724/148‑1 (MQ=255)                                                        aCCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCcg                                                                                     >  8:116382/1‑148 (MQ=255)                                                          cTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCcgcg                                                                                   >  2:150588/1‑148 (MQ=255)                                                                    tGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTGCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCt                                                                         <  5:51642/148‑1 (MQ=255)                                                                                            cccATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGt                                                 <  2:132123/148‑1 (MQ=255)                                                                                                    ctccGGCTGGCAGCGCAGCGAGGACGGGTCCTGGACCTTGTCGCAGGTCTTGTGCGACAGCGACACTTCGCTGGAGGCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGAGCTGGCCGCGTTGGCCACGCACTTCGTGGACAcgc                                         <  5:143252/145‑1 (MQ=255)                                                                                                    cTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACAcgc                                         <  5:143251/148‑1 (MQ=255)                                                                                                    cTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACAcgc                                         >  7:110970/1‑148 (MQ=255)                                                                                                    cTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGGTGGCCACGCACTTCGTGGACAcgc                                         >  8:121836/1‑148 (MQ=255)                                                                                                              cagcgcagcgAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACACGCGCATCGaa                                 <  1:62440/146‑1 (MQ=255)                                                                                                                gcgcagcgAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCCCGCACTTCGTGGACACGCGCATCGAAGGgc                             >  2:80231/1‑148 (MQ=255)                                                                                                                   cagcgAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACACGCGCATCGAAGGgcgag                          >  3:62592/1‑148 (MQ=255)                                                                                                                             gggTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACACGCGCATCGAAGGGCGAGCGCGAGCCCa                <  4:154620/148‑1 (MQ=255)                                                                                                                                           gTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACATGCGCATCGAAGGGCGAGCGCGAGCCCAATGCGGCTTCGACg  >  1:151031/1‑148 (MQ=255)                                                                                                                                                |                                                                                                                                               TTCGGCAGCGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTGGCCACGCACTTCGTGGACACGCGCATCGAAGGGCGAGCGCGAGCCCAATGCGGCTTCGACG  >  NC_002947/5734701‑5734986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.