New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5734844	28 (0.970)	5 (0.180)	5/276	3.0	16.5%	coding (820/1533 nt)	hutH	histidine ammonia‑lyase
	?	NC_002947	= 5734851	24 (0.870)					coding (813/1533 nt)	hutH	histidine ammonia‑lyase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACACGCGCATCGAAGGGCGAGCGCGAGCCCAATGCGGCTTCGACGCTCAGGC  >  NC_002947/5734709‑5734993                                                                                                                                               |                                                                                                                                                cGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcg                                                                                                                                             >  3:154620/1‑147 (MQ=255)  gAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcg                                                                                                                                             >  6:143251/1‑146 (MQ=255)  gAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcg                                                                                                                                             >  2:62440/1‑146 (MQ=255)        cAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcgacagcgac                                                                                                                                     >  6:82268/1‑148 (MQ=255)         aGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTgcgccagcgaca                                                                                                                                    >  8:140127/1‑148 (MQ=255)              gTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCCTGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCg                                                                                                                               >  3:107849/1‑148 (MQ=255)                  tCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTg                                                                                                                            <  8:133025/147‑1 (MQ=255)                   ccGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGa                                                                                                                          <  2:34529/148‑1 (MQ=255)                        acaGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGc                                                                                                                     >  8:131900/1‑148 (MQ=255)                             gTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCcagc                                                                                                                <  4:77594/148‑1 (MQ=255)                                           ccAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCa                                                                                                  >  3:81118/1‑148 (MQ=255)                                           ccAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCa                                                                                                  >  1:33284/1‑148 (MQ=255)                                               tACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGcc                                                                                              <  3:79724/148‑1 (MQ=255)                                                aCCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCcg                                                                                             >  8:116382/1‑148 (MQ=255)                                                  cTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCcgcg                                                                                           >  2:150588/1‑148 (MQ=255)                                                            tGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTGCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCt                                                                                 <  5:51642/148‑1 (MQ=255)                                                                                    cccATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGt                                                        <  2:132123/148‑1 (MQ=255)                                                                                            ctccGGCTGGCAGCGCAGCGAGGACGGGTCCTGGACCTTGTCGCAGGTCTTGTGCGACAGCGACACTTCGCTGGAGGCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGAGCTGGCCGCGTTG‑GCCACGCACTTCGTGGACAcgc                                                <  5:143252/145‑1 (MQ=255)                                                                                            cTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACAcgc                                                <  5:143251/148‑1 (MQ=255)                                                                                            cTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACAcgc                                                >  7:110970/1‑148 (MQ=255)                                                                                            cTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGGTG‑GCCACGCACTTCGTGGACAcgc                                                >  8:121836/1‑148 (MQ=255)                                                                                                      cagcgcagcgAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACACGCGCATCGaa                                        <  1:62440/146‑1 (MQ=255)                                                                                                        gcgcagcgAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCCCGCACTTCGTGGACACGCGCATCGAAGGgc                                    >  2:80231/1‑148 (MQ=255)                                                                                                           cagcgAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACACGCGCATCGAAGGgcgag                                 >  3:62592/1‑148 (MQ=255)                                                                                                                     gggTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACACGCGCATCGAAGGGCGAGCGCGAGCCCa                       <  4:154620/148‑1 (MQ=255)                                                                                                                                   gTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACATGCGCATCGAAGGGCGAGCGCGAGCCCAATGCGGCTTCGACg         >  1:151031/1‑148 (MQ=255)                                                                                                                                          tggttGGGCGACTGCCACACTGCGCTGGAGGCGCCCAGCTGGGCGGGGCCGCTGGCCGCGGTGTGGATCGGGCCG‑GTTGCGCCACTCACTTCGTGCACACGCGCATCGAAGGGGGTGCCCGCGCCCAATGCGGCTTCGACGCTCAGgc  <  2:130/145‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                CGAACACCAGCGGGTTGTCCGACACAGCGTTGGCTTCGATGCCCAGTACCTCGGCGGCCTGACGCAGCTGGGTCAGGCAGGCACCCATGACCTGCGGCTGGCAGCGCAGCGAGTACGGGTCCTGGACCTTGTCGCAGTTCTTGTGCGACAGCGACACTTCGCTGGAGTCGCCCAGCAGGTCGCGGAAGCAGGCCGCGGTGTCGATCTGGCCGCGTTG‑GCCACGCACTTCGTGGACACGCGCATCGAAGGGCGAGCGCGAGCCCAATGCGGCTTCGACGCTCAGGC  >  NC_002947/5734709‑5734993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.