New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477130	27 (0.400)	4 (0.080)	4/202	7.4	18.1%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477147	17 (0.350)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5476945‑5477130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcctgtgccggcctattcgcgggtaaacccgctcctacgATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGCCAC  <  NC_002947/5477147‑5477000                                                                                                                                                                                                                                                                                                                                                ggCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           <  6:400079/147‑1 GCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           <  7:242145/149‑1            GTGCAACGCCATCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTTGTCAGGTATCAATATTGATGTTGCCTGTGCCGGC                                                                                                                                                                                 <  5:281898/148‑1                 ACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           >  6:88119/1‑133                 ACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           >  5:380956/1‑133                 ACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           <  5:88119/133‑1                 ACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           <  6:380956/133‑1                        CAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTA                                                                                                                                                                    <  7:286826/149‑1                          GACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAA                                                                                                                                                                  <  1:82412/149‑1                           ACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAAC                                                                                                                                                                 >  2:224574/1‑149                             CCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCTGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCC                                                                                                                                                               >  6:115257/1‑149                                GCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCT                                                                                                                                                            >  4:82682/1‑149                                 CCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCT                                                                                                                                                            <  1:290136/148‑1                                    GCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                        <  6:198825/149‑1                                     CCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGATCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                       >  3:218848/1‑149                                                                                       CTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                          >  2:133455/1‑128                                                                                       CTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                          <  1:133455/128‑1                                                                                                     CATGCATGCGTTGCCGCAGGCGTTGATCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           >  1:25943/1‑49                                                                                                     CATGCATGCGTTGCCGCAGGCGTTGATCAGGTATCAATATTGATGTTGC                                                                                                                                                                                           <  2:25943/49‑1                                                                                                                             GGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCG                                                                                                                           <  4:281058/89‑1                                                                                                                             GGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCG                                                                                                                           >  3:281058/1‑89                                                                                                                                                                      GCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACG                       >  2:51483/1‑148                                                                                                                                                                        GGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCAT                    <  5:312191/149‑1                                                                                                                                                                        GGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCAT                    >  6:312191/1‑149                                                                                                                                                                          GTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGC                  >  7:102425/1‑149                                                                                                                                                                              ACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCAGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGG               >  5:115257/1‑148                                                                                                                                                                                  GCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACA          >  4:20442/1‑149                                                                                                                                                                                        ACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGATCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGCC    >  4:218848/1‑149                                                                                                                                                                                          GATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGCCAC  <  1:51483/149‑1                                                                                                                                                                                          GATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGCCAC  <  8:102425/149‑1                                                                                                                                                                                                                                                                                                                                                GCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5476945‑5477130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcctgtgccggcctattcgcgggtaaacccgctcctacgATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGCCAC  <  NC_002947/5477147‑5477000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.