New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477130	27 (0.400)	4 (0.080)	4/202	7.4	18.1%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477147	17 (0.350)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGT  >  NC_002947/5476986‑5477276                                                                                                                                                 |                                                                                                                                                    ccGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CAc                                                                                                                                                 <  8:67028/148‑1 (MQ=255)  cGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACgg                                                                                                                                               <  5:214239/149‑1 (MQ=255)        gggTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATcgc                                                                                                                                         <  3:82682/149‑1 (MQ=255)         ggTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATcgcg                                                                                                                                        <  1:224574/149‑1 (MQ=255)               gtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATc                                                                                                                                  >  1:51483/1‑149 (MQ=255)               gtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATc                                                                                                                                  >  8:102425/1‑149 (MQ=255)                 ggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGATCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGt                                                                                                                                <  4:218848/149‑1 (MQ=255)                       tgtTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGc                                                                                                                          <  4:20442/149‑1 (MQ=255)                            ccGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCTGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGt                                                                                                                      <  5:115257/148‑1 (MQ=255)                               gCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTAc                                                                                                                  <  7:102425/149‑1 (MQ=255)                                 aTGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTAccc                                                                                                                <  6:312191/149‑1 (MQ=255)                                 aTGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTAccc                                                                                                                >  5:312191/1‑149 (MQ=255)                                    cGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCcgc                                                                                                              <  2:51483/148‑1 (MQ=255)                                                                                                                  ccGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCg                               >  5:323269/1‑149 (MQ=255)                                                                                                                     gCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGccc                            >  5:372380/1‑149 (MQ=255)                                                                                                                     gCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGcc                             >  1:316472/1‑148 (MQ=255)                                                                                                                       cTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGT‑GCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAg                          >  1:11025/1‑149 (MQ=17)                                                                                                                       cTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGT‑GCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAg                          >  8:26865/1‑149 (MQ=17)                                                                                                                       cTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTcc                                                                >  8:170542/1‑111 (MQ=255)                                                                                                                       cTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTcc                                                                <  7:170542/111‑1 (MQ=255)                                                                                                                               gggTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGACTCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCgctgct                  >  8:78565/1‑149 (MQ=255)                                                                                                                                  tAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCTGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                    <  4:345938/112‑1 (MQ=255)                                                                                                                                    aaCCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGc             >  6:52750/1‑149 (MQ=255)                                                                                                                                       ccGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGaa          >  8:231218/1‑149 (MQ=255)                                                                                                                                         gCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATc        >  1:62398/1‑149 (MQ=255)                                                                                                                                             cTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGa      <  2:316472/147‑1 (MQ=255)                                                                                                                                                 g‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCAGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGATTCGAGGGt  >  5:10313/1‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGT  >  NC_002947/5476986‑5477276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.