New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477130	27 (0.400)	4 (0.080)	4/202	7.4	18.1%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477147	17 (0.350)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTC  >  NC_002947/5477000‑5477294                                                                                                                                                     |                                                                                                                                                    gtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATc                                                                                                                                                    >  8:102425/1‑149 (MQ=255) gtggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATc                                                                                                                                                    >  1:51483/1‑149 (MQ=255)   ggCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGATCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGt                                                                                                                                                  <  4:218848/149‑1 (MQ=255)         tgtTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGc                                                                                                                                            <  4:20442/149‑1 (MQ=255)              ccGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCTGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGt                                                                                                                                        <  5:115257/148‑1 (MQ=255)                 gCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTAc                                                                                                                                    <  7:102425/149‑1 (MQ=255)                   aTGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTAccc                                                                                                                                  <  6:312191/149‑1 (MQ=255)                   aTGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTAccc                                                                                                                                  >  5:312191/1‑149 (MQ=255)                      cGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCcgc                                                                                                                                <  2:51483/148‑1 (MQ=255)                                                                                                    ccGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCg                                                 >  5:323269/1‑149 (MQ=255)                                                                                                       gCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGccc                                              >  5:372380/1‑149 (MQ=255)                                                                                                       gCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGcc                                               >  1:316472/1‑148 (MQ=255)                                                                                                         cTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGT‑GCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAg                                            >  1:11025/1‑149 (MQ=17)                                                                                                         cTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGT‑GCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAg                                            >  8:26865/1‑149 (MQ=17)                                                                                                         cTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTcc                                                                                  <  7:170542/111‑1 (MQ=255)                                                                                                         cTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTcc                                                                                  >  8:170542/1‑111 (MQ=255)                                                                                                                 gggTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGACTCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCgctgct                                    >  8:78565/1‑149 (MQ=255)                                                                                                                    tAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCTGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGc                                                                      <  4:345938/112‑1 (MQ=255)                                                                                                                      aaCCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGc                               >  6:52750/1‑149 (MQ=255)                                                                                                                         ccGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGaa                            >  8:231218/1‑149 (MQ=255)                                                                                                                           gCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATc                          >  1:62398/1‑149 (MQ=255)                                                                                                                               cTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGa                        <  2:316472/147‑1 (MQ=255)                                                                                                                                   g‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCAGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGATTCGAGGGt                    >  5:10313/1‑147 (MQ=255)                                                                                                                                                    aTCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTcagc                >  4:356942/1‑135 (MQ=255)                                                                                                                                                    aTCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTcagc                <  3:356942/135‑1 (MQ=255)                                                                                                                                                     tCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTc  <  5:52750/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑CACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTC  >  NC_002947/5477000‑5477294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.