| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.030) | 45 (0.680) +GCC |
38/278 | 1.1 | 95.8% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.030) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CG‑‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCAT > NC_002947/5555461‑5555744 | cGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGg < 6:87396‑M1/149‑2 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccg > 7:42413‑M1/1‑143 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccgg < 2:272506‑M1/148‑8 (MQ=255) cTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggca < 4:49896‑M1/149‑10 (MQ=255) tgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatt > 5:187870‑M1/1‑137 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgc < 6:93472‑M1/149‑18 (MQ=255) aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgc < 8:42413‑M1/148‑18 (MQ=255) aTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtg > 7:20139‑M1/1‑129 (MQ=255) aGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtat < 4:48044‑M1/148‑24 (MQ=255) gCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaaca > 7:221126‑M1/1‑119 (MQ=255) cgggtcagcgaTTTGTCGGGCGGACATGAGCACGTCCTTTTGTCCTTTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCATTGTGTCGCTAAAGCGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaac < 6:18027‑M1/144‑33 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatg > 2:96582‑M1/1‑103 (MQ=255) ggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccgggcatttcggcgtgtttggaacaaacctggggctgctatggagc > 1:280964‑M1/1‑99 (MQ=255) gCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcc < 3:55601‑M1/149‑52 (MQ=255) cATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgcatagcagccccagg < 8:221126‑M1/149‑57 (MQ=255) aTGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcg < 1:96582‑M1/149‑58 (MQ=255) aTGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcg < 5:391159‑M1/149‑58 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAAGGGCCCCCAAG‑CGgccccggcaatttccgcgggtatgcaaaaaaactggggctggtatgaagccctttggcg > 6:90112‑M1/1‑90 (MQ=255) cTCCTTTTGTCATTTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 1:335994‑M1/149‑66 (MQ=255) cTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 8:87670‑M1/149‑66 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgct < 1:82348‑M1/127‑44 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgct > 2:82348‑M1/1‑83 (MQ=255) ttGTAATGTGTCGCCTAAAGAATAGCAAAACCGGTCTTGTGTGGTAGGGGCTTTGTGTCGCTAAAGGGCCGAATAG‑GGGC‑CCGGGAAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCTAAACAAGGccc < 6:247022/148‑1 (MQ=255) tGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggccca < 7:339486‑M1/148‑72 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaag < 6:187870‑M1/149‑77 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTGTAGCCAAAAGGCCCCAAAG‑CGGCCCC‑CGCAAATTACGCGTTTATGCAAAAAAACAGGGGCTGCTAATCAGACCTTTAGCGACACAAAGCCcatggcggc > 6:336797/1‑141 (MQ=255) gCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctt < 2:30196‑M1/149‑91 (MQ=255) aTAGCAACACCGCTCAGGTGTGGGAGCGGCGTTTTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttca < 2:271387‑M1/149‑93 (MQ=255) aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctt > 4:245489‑M1/1‑57 (MQ=255) ccGCTCAGGTGTGGGAGGGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaa < 6:22952‑M1/149‑102 (MQ=255) ccGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaa < 5:90112‑M1/149‑102 (MQ=255) tgaGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctg < 7:300509‑M1/148‑115 (MQ=255) ggAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcccgttcgcggcaccaggcgcacaaaggaccgcgcaggcgtcaggcccggaactggccccggctg > 5:332487‑M1/1‑35 (MQ=255) ccTTGTGTCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcg > 6:391911‑M1/1‑28 (MQ=255) tCGCGAAAGGGCCGCATAG‑CGgccccggcgatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagc > 1:4495‑M1/1‑21 (MQ=255) tCGCGAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagc > 5:125424‑M1/1‑21 (MQ=255) gcgAAAGGGCCCCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagcc < 7:88311‑M1/148‑130 (MQ=255) cgAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgc > 3:73246‑M1/1‑18 (MQ=255) gAAAGGGCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgc > 5:391845‑M1/1‑17 (MQ=255) ggCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgcca > 6:362315‑M1/1‑12 (MQ=255) ggCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgcca < 5:362315‑M1/145‑134 (MQ=255) ggCCGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaaccgggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatc < 7:196318‑M1/149‑138 (MQ=255) ccGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcggctcagctgcgcgcca > 2:36204‑M1/1‑10 (MQ=255) ccGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactcggcccaggctggcggctcagctgcgcgcca < 1:36204‑M1/144‑135 (MQ=255) cGCATAG‑CGgccccggcaatttccgcgtgtatggaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc > 3:224516‑M1/1‑9 (MQ=255) cGCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc < 3:245489‑M1/149‑141 (MQ=255) gCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaa > 8:208646‑M1/1‑8 (MQ=255) gCATAG‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaa < 7:208646‑M1/83‑76 (MQ=255) | CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAG‑CG‑‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCAT > NC_002947/5555461‑5555744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |