| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.030) | 45 (0.680) +GCC |
38/278 | 1.1 | 95.8% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.030) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
TCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555466‑5555755 | tcactgtgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑g > 7:42413‑M2/147‑149 (MQ=255) actgtgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑gg < 2:272506‑M2/4‑1 (MQ=255) ctgtgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCa < 4:49896‑M2/6‑1 (MQ=255) tgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAAtt > 5:187870‑M2/141‑149 (MQ=255) gaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCcgc < 6:93472‑M2/14‑1 (MQ=255) aaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCcgc < 8:42413‑M2/14‑1 (MQ=255) attcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCgtg > 7:20139‑M2/133‑149 (MQ=255) aggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTAt < 4:48044‑M2/20‑1 (MQ=255) gcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGcaaca > 7:221126‑M2/123‑148 (MQ=255) cgggtcagcgatttgtcgggcggacatgagcacgtccttttgtcctttgtcgccgacagcatagcaacaccgctcaggtgtgggagcggcattgtgtcgctaaagcgccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAAc < 6:18027‑M2/29‑1 (MQ=255) gtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATg > 2:96582‑M2/107‑149 (MQ=255) ggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGGCATTTCGGCGTGTTTGGAACAAACCTGGGGCTGCTATGGAGc > 1:280964‑M2/103‑149 (MQ=255) gcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGcc < 3:55601‑M2/48‑1 (MQ=255) catgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAgcagccccagg < 8:221126‑M2/53‑5 (MQ=255) atgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcg < 1:96582‑M2/54‑1 (MQ=255) atgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcg < 5:391159‑M2/54‑1 (MQ=255) gagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcggaagggcccccaagcggccCC‑GGCAATTTCCGCGGGTATGCAAAAAAACTGGGGCTGGTATGAAGCCCTTTggcg > 6:90112‑M2/94‑149 (MQ=255) tccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagccggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGgctgct < 1:82348‑M2/40‑1 (MQ=255) ctccttttgtcatttgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACaa < 1:335994‑M2/62‑1 (MQ=255) ctccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACaa < 8:87670‑M2/62‑1 (MQ=255) tccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGgctgct > 2:82348‑M2/87‑126 (MQ=255) ttGTAATGTGTCGCCTAAAGAATAGCAAAACCGGTCTTGTGTGGTAGGGGCTTTGTGTCGCTAAAGGGCCGAATAGGGGC‑CCGGGAAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCTAAACAAGGccc < 6:247022/148‑1 (MQ=255) tgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCca < 7:339486‑M2/68‑1 (MQ=255) atgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 6:187870‑M2/73‑1 (MQ=255) tgtCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTGTAGCCAAAAGGCCCCAAAGCGGCCCC‑CGCAAATTACGCGTTTATGCAAAAAAACAGGGGCTGCTAATCAGACCTTTAGCGACACAAAGCCcatggcggc > 6:336797/1‑141 (MQ=255) gcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCtt < 2:30196‑M2/87‑1 (MQ=255) atagcaacaccgctcaggtgtgggagcggcgttttgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCa < 2:271387‑M2/89‑1 (MQ=255) atagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCtt > 4:245489‑M2/61‑147 (MQ=255) ccgctcaggtgtgggaggggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa < 6:22952‑M2/98‑1 (MQ=255) ccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa < 5:90112‑M2/98‑1 (MQ=255) tgagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTg < 7:300509‑M2/111‑1 (MQ=255) ggagcggccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCGTTCGCGGCACCAGGCGCACAAAGGACCGCGCAGGCGTCAGGCCCGGAACT‑GGCCCCGGCTg > 5:332487‑M2/39‑149 (MQ=255) ccttgtgtcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGgc‑gcg > 6:391911‑M2/32‑147 (MQ=255) tcgcgaaagggccgcatagcggccCC‑GGCGATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAgc > 1:4495‑M2/25‑149 (MQ=255) tcgcgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAgc > 5:125424‑M2/25‑149 (MQ=255) gcgaaagggccccatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAgcc < 7:88311‑M2/126‑1 (MQ=255) cgaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAgccgc > 3:73246‑M2/22‑149 (MQ=255) gaaagggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAgccgc > 5:391845‑M2/21‑148 (MQ=255) ggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCa > 6:362315‑M2/16‑145 (MQ=255) ggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCa < 5:362315‑M2/130‑1 (MQ=255) ggccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCGGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGatc < 7:196318‑M2/134‑1 (MQ=255) ccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTCGGCCCAGGCTGGCGGCTCagctgcgcgcca < 1:36204‑M2/131‑5 (MQ=255) ccgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGCGGCTCagctgcgcgcca > 2:36204‑M2/14‑139 (MQ=255) cgcatagcggccCC‑GGCAATTTCCGCGTGTATGGAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGatcatc > 3:224516‑M2/13‑149 (MQ=255) cgcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGatcatc < 3:245489‑M2/137‑1 (MQ=255) gcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACaaa < 7:208646‑M2/72‑1 (MQ=255) gcatagcggccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACaaa > 8:208646‑M2/12‑83 (MQ=255) ccCC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTg > 6:237324‑M2/3‑149 (MQ=255) | TCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCG‑‑‑CC‑GGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACT‑GGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555466‑5555755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |