New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	533510 =	NA (NA)	6 (0.120)	4/238	NT	21.7%	coding (775/1194 nt)	tufA	elongation factor Tu‑A
	?	NC_002947	= 533506	24 (0.450)					coding (771/1194 nt)	tufA	elongation factor Tu‑A

ACTTGGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAggtggtggtggtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/533657‑533510 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCGGCATCAGGAACGGCTGGTCGATAGCACGAACTGGCTC  <  NC_002947/533506‑533348                                                                                                                                                                                                                                                                                                                     ACTTGGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAG                                                                                                                                                                <  2:240257/149‑1  CTTGGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGG                                                                                                                                                               >  5:161828/1‑149   TTGGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGT                                                                                                                                                              >  7:154371/1‑149     GGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGG                                                                                                                                                            >  4:131747/1‑149     GGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTG                                                                                                                                                             <  4:191990/148‑1     GGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGT                                                                                                                                                              <  5:133964/147‑1      GTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGG                                                                                                                                                            <  1:209049/148‑1       TGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTG                                                                                                                                                          <  3:243246/149‑1        GTGCGGCTTGAACGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTG                                                                                                                                                          <  6:322875/148‑1         TGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGT                                                                                                                                                        >  4:57219/1‑149           CGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTG                                                                                                                                                       <  3:31672/148‑1            GGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGT                                                                                                                                                     <  6:232412/149‑1            GGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGT                                                                                                                                                     >  1:37137/1‑149            GGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGT                                                                                                                                                     >  7:40057/1‑149             GCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCGGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTG                                                                                                                                                    <  4:159868/149‑1             GCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTG                                                                                                                                                    <  5:189212/149‑1                              TTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTGTCACGCAGACCAACGAT                                                                                                                                   >  6:210867/1‑149                                 ACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGG                                                                                                                                                            <  8:124112/121‑1                                                                                           AGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCA                                                                      <  5:210867/149‑1                                                                                                                    CAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTT                                             >  2:293844/1‑149                                                                                                                    CAGCAGCTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTT                                             >  2:228845/1‑149                                                                                                                          CTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCG                                       <  1:293844/149‑1                                                                                                                          CTTGCGGAACATCTCAACACCGGTGCAGGTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCG                                       <  1:228845/149‑1                                                                                                                                                      GTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCGGCATCAGGAACGGCTGGTCGATAGCAC            <  2:39240/148‑1                                                                                                                                                         GTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCGGCATCAGGAACGGCTGGTCGATAGCACGAAC        >  2:40783/1‑149                                                                                                                                                            GTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCGGCATCAGGAACGGCTGGTCGATAGCACGAACTGG     <  6:121934/149‑1                                                                                                                                                               GTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCGGCATCAGGAACGGCTGGTCGATAGCACGAACTGGCTC  <  6:43177/149‑1                                                                                                                                                                                                                                                                                                                     ACTTGGTGTGCGGCTTGACCGAACCTGGCTTGACCAGAACCTGGCCACGCTCAACGTCGTCACGCTTGGTACCACGCAGCAGAACGCCGCAGTTCTCGCCAGCACGACCTTCGTCCAGCAGCTTGCGGAACATCTCAACACCGGTGCAggtggtggtggtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/533657‑533510 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGTGGTGGTGTCACGCAGACCAACGATTTCCAGCGGATCCTGAACGCGGACGATGCCACGCTCGATACGACCGGTAACAACGGTACCACGACCCGAGATCGAGAACACGTCTTCGATCGGCATCAGGAACGGCTGGTCGATAGCACGAACTGGCTC  <  NC_002947/533506‑533348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.