New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	533510 =	NA (NA)	6 (0.120)	4/238	NT	21.7%	coding (775/1194 nt)	tufA	elongation factor Tu‑A
	?	NC_002947	= 533506	24 (0.450)					coding (771/1194 nt)	tufA	elongation factor Tu‑A

TCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGAC  >  NC_002947/533364‑533599                                                                                                                                                   |                                                                                          tCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTg                                                                                          >  5:121360/1‑148 (MQ=32)    aCCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCAcc                                                                                      >  6:178931/1‑149 (MQ=32)          cGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGtt                                                                                <  7:129028/149‑1 (MQ=32)            ttCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTga                                                                              <  6:99923/149‑1 (MQ=32)            ttCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTga                                                                              <  5:43177/149‑1 (MQ=32)                       gATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGc                                                                    >  2:176588/1‑148 (MQ=32)                       gATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGc                                                                    >  5:219713/1‑148 (MQ=32)                        aTCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGc                                                                    >  4:268628/1‑147 (MQ=32)                                         gATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAgg                                                   <  6:219713/147‑1 (MQ=32)                                               gggTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTc                                                 <  1:39240/143‑1 (MQ=32)                                                          ccGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGGGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgc                                <  5:102834/149‑1 (MQ=17)                                                                     ggTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTctgct                     <  6:121360/149‑1 (MQ=32)                                                                      gTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgcggc                             <  3:141328/140‑1 (MQ=32)                                                                      gTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTgcggc                             >  4:141328/1‑140 (MQ=32)                                                                       tCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCtgctgc                   >  3:23257/1‑149 (MQ=32)                                                                       tCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCtgctgc                   >  2:141601/1‑149 (MQ=32)                                                                          tATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTg                <  5:121934/149‑1 (MQ=32)                                                                           aTCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGGACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTgg               >  2:187649/1‑149 (MQ=17)                                                                              gAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGCAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGACAACAGCGGCGTTCTGCTGCGTCGTa             >  2:69535/1‑148 (MQ=255)                                                                               aGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTAcc           <  4:23257/149‑1 (MQ=32)                                                                               aGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTAc            >  4:61023/1‑148 (MQ=32)                                                                                   tGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGc       >  3:101220/1‑149 (MQ=32)                                                                                   tGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGc       <  1:69535/149‑1 (MQ=32)                                                                                    ggCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCg      >  4:31435/1‑149 (MQ=32)                                                                                        tCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTgac  <  1:141601/149‑1 (MQ=32)                                                                                                                                                   |                                                                                          TCGACCAGCCGTTCCTGATGCCGATCGAAGACGTGTTCTCGATCTCGGGTCGTGGTACCGTTGTTACCGGTCGTATCGAGCGTGGCATCGTCCGCGTTCAGGATCCGCTGGAAATCGTTGGTCTGCGTGACACCACCACCACCACCTGCACCGGTGTTGAGATGTTCCGCAAGCTGCTGGACGAAGGTCGTGCTGGCGAGAACTGCGGCGTTCTGCTGCGTGGTACCAAGCGTGAC  >  NC_002947/533364‑533599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.