New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 654740	62 (1.150)	3 (0.060)	3/242	NT	5.2%	coding (3/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 654774	52 (1.050)					intergenic (‑32/+213)	ctpL/PP_0563	methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator

CCGCCTGGTTCTGGAACTGCTGGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/654583‑654740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttcaggcgcCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCTGAAGTGGCTGACCAATTTCAACACGCTGTTGCTGGTGACCGTGTGTATCGCCTTGGGCGCCACCCTGTGGTGGTCACAGCGCGCCCTCGAACGCCCCTACCAGCTGA  <  NC_002947/654774‑654628                                                                                                                                                                                                                                                                                                                   CCGCCTGGTTCTGGAACTGCTGGGGCAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACTCACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCAC                                                                                                                                                              <  7:183722/149‑1    CCTGGTTCTGGAACTGCTGGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTT                                                                                                                                                            >  5:69956/1‑148         TTCTGGAACTGCTGGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGGCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCG                                                                                                                                                      <  6:167771/149‑1                                                  CTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCT                                                                                                             <  6:226266/149‑1                                                                                 CACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCTGAAGTG                                                                                                       >  7:4310/1‑124                                                                                 CACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCTGAAGTG                                                                                                       <  8:4310/124‑1                                                                                                                                                    cccTCACGCGCCTACCTCTCCCCTGCGCAGCAAGTTCGCGGCTATGCGCCTGAAGTGGCTGACCAAATTCCACACGCTGTTGCTGGTGACCGTCTGTATCGCCTTGGGCGCCACCCTGTGGTGGTCACAGCGCGCCCGCGAACGCCCCT           <  6:21970/146‑1                                                                                                                                                        CAGGCGCCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCTGAAGTGGCTGACCAATTTCAACACGCTGTTGCTGGTGACCGTGTGTATCGCCTTGGGCGCCACCCTGTGGTGGTCACAGCGCGCCCTCGAACGCCCCTACC        <  5:22869/148‑1                                                                                                                                                          GGCGCCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCTGAAGTGGCTGACCAATTTCAACACGCTGTTGCTGGTGACCGTGTGTATCGCCTTGGGCGCCACCCTGTGGTGGTCACAGCGCGCCCTCGAACGCCCCTACCAGC     <  1:170955/149‑1                                                                                                                                                             GCCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCTGAAGTGGCTGACCAATTTCAACACGCTGTTGCTGGTGACCGTGTGTATCGCCTTGGGCGCCACCCTGTGGTGGTCACAGCGCGCCCTCGAACGCCCCTACCAGCTGA  <  2:215809/149‑1                                                                                                                                                                                                                                                                                                                   CCGCCTGGTTCTGGAACTGCTGGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/654583‑654740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttcaggcgcCTACCTCTCCCCTGCGCAGGAAGTTCGCGGCTATGCGCCTGAAGTGGCTGACCAATTTCAACACGCTGTTGCTGGTGACCGTGTGTATCGCCTTGGGCGCCACCCTGTGGTGGTCACAGCGCGCCCTCGAACGCCCCTACCAGCTGA  <  NC_002947/654774‑654628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.