New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 654740	62 (1.150)	3 (0.060)	3/242	NT	5.2%	coding (3/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 654774	52 (1.050)					intergenic (‑32/+213)	ctpL/PP_0563	methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator

TCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTTTACCTCCAGACT  >  NC_002947/654628‑654919                                                                                                                                                     |                                                                                                                                                  tCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgc                                                                                                                                                 <  2:215809‑M2/149‑3 (MQ=255)    gCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcc                                                                                                                                              <  1:170955‑M2/149‑6 (MQ=255)       ggTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctg                                                                                                                                            <  5:22869‑M2/148‑8 (MQ=255)          aGGGGCGTTCGCGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACAGACGGTCACCAGCAACAGCGTGTGGAATTTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTGCTGCGCAGGGGAGAGGTAGgcgcgtgaggg                                                                                                                                        <  6:21970‑M2/149‑12 (MQ=255)             ggCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAt                                                                                                                                     >  2:148272/1‑149 (MQ=255)              gCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAtt                                                                                                                                    <  1:317715/149‑1 (MQ=255)               cGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTg                                                                                                                                   <  7:185669/149‑1 (MQ=255)                    gAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGAtt                                                                                                                              >  8:302385/1‑149 (MQ=255)                      gggCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGAtttt                                                                                                                            <  1:215809/149‑1 (MQ=255)                       ggCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTtg                                                                                                                           <  6:69956/149‑1 (MQ=255)                        gcgcgcTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTtgt                                                                                                                          >  5:284645/1‑149 (MQ=255)                          gcgcTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGTCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGa                                                                                                                        >  1:129142/1‑149 (MQ=255)                                   ccaccaCAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                                                               >  3:256649/1‑149 (MQ=255)                                   ccaccaCAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGATGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                                                               <  2:262340/149‑1 (MQ=255)                                    caccacAGGGTGGCGCCCAAGGCGATACATACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                                                               >  7:126967/1‑148 (MQ=255)                                      ccacAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGAc                                                                                                            >  1:186238/1‑149 (MQ=255)                                       cacaGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACg                                                                                                           >  5:1026/1‑149 (MQ=255)                                       cacaGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACg                                                                                                           >  5:122838/1‑149 (MQ=255)                                       cacaGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACg                                                                                                           >  7:225175/1‑149 (MQ=255)                                            ggTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGTGATTTTGTGACgg                                                                                                                     <  7:54888/134‑1 (MQ=255)                                            ggTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGTGATTTTGTGACgg                                                                                                                     >  8:54888/1‑134 (MQ=255)                                                  gcCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTg                                                                                                >  8:272454/1‑149 (MQ=255)                                                        ggCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCa                                                                                          <  7:8353/149‑1 (MQ=255)                                                        ggCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCa                                                                                          <  6:269013/149‑1 (MQ=255)                                                          cGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGGGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGc                                                                                                   >  7:58059/1‑138 (MQ=255)                                                          cGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGGGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGc                                                                                                   <  8:58059/138‑1 (MQ=255)                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaaaa                                                                                  <  7:272454/149‑1 (MQ=255)                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaaaa                                                                                  <  8:225175/149‑1 (MQ=255)                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaaaa                                                                                  <  4:256649/149‑1 (MQ=255)                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaa                                                                                    >  5:137070/1‑147 (MQ=255)                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaa                                                                                      <  8:269133/145‑1 (MQ=255)                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaa                                                                                      >  7:269133/1‑145 (MQ=255)                                                                  acGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAAAAATACCTGCGCAGGGGAGAGGTAGGCGCGTGAAGTTATTGCGATTTTTTGACGGGGTAATGACGCCAGGGGATTGGTGACAGaaaaaaa                                                                                  >  1:97750/1‑149 (MQ=255)                                                                  acGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGt                                                                                <  6:319442/149‑1 (MQ=255)                                                                  acGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGt                                                                                >  7:94804/1‑149 (MQ=255)                                                                      tCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGTCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGca                                                                            <  2:129142/149‑1 (MQ=255)                                                                      tCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGca                                                                            >  1:199505/1‑149 (MQ=255)                                                                      tCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGca                                                                            <  7:302385/149‑1 (MQ=255)                                                                           aGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTg                                                                       >  3:91144/1‑149 (MQ=255)                                                                            gCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTg                                                                       >  4:125915/1‑148 (MQ=255)                                                                                    gtgtTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTg                                                              <  6:137070/149‑1 (MQ=255)                                                                                      attGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGgt                                                            >  3:222106/2‑149 (MQ=255)                                                                                         gAAATTGGTGAGCCACTTGAGGCGGATAGCCGCG‑‑TACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGgtgt                                                          <  2:281377/148‑1 (MQ=255)                                                                                         gAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGgtgt                                                          <  6:22869/148‑1 (MQ=255)                                                                                           aaTTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGc                                                       <  2:97750/149‑1 (MQ=255)                                                                                                 tCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCAc                                                 <  8:94804/149‑1 (MQ=255)                                                                                                 tCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCAc                                                 >  6:187746/1‑149 (MQ=255)                                                                                                     ccACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGc                                             <  8:126967/149‑1 (MQ=255)                                                                                                      cACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtg                                                                     <  8:4310‑M2/124‑79 (MQ=255)                                                                                                      cACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtg                                                                     >  7:4310‑M2/1‑46 (MQ=255)                                                                                                      cACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGcc                                            <  6:122838/149‑1 (MQ=255)                                                                                                        cTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCctc                                          <  4:91144/149‑1 (MQ=255)                                                                                                          tCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAATGAGATTTTGAGACGTGGTGATGACGCAAGGGGATTGGTTTCAGAAAAAAAGTGGCACAGTGCCTAAATTCATATGGCCGGCACTGGCCTCtt                                        >  8:217705/1‑149 (MQ=255)                                                                                                            aGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctaccag                                      <  6:226266‑M2/149‑110 (MQ=255)                                                                                                            aGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTcg                                      >  7:302768/1‑149 (MQ=255)                                                                                                              gcgcATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTcgcg                                    >  2:230505/1‑149 (MQ=255)                                                                                                                       cgcg‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGccc                           <  4:222106/149‑1 (MQ=255)                                                                                                                              aCTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCAAGCCCGcgaa                      <  6:284645/149‑4 (MQ=255)                                                                                                                                      cgcAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAgg                <  3:125915/147‑1 (MQ=255)                                                                                                                                      cgcAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAgg                <  2:186238/147‑1 (MQ=255)                                                                                                                                      cgcAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGtt              <  2:199505/149‑1 (MQ=255)                                                                                                                                                agGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTTTACCTCCAGa    >  5:102290/1‑149 (MQ=255)                                                                                                                                                  gTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTTTACCTCCAGACt  >  1:225903/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTTTACCTCCAGACT  >  NC_002947/654628‑654919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.