New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 654740	62 (1.150)	3 (0.060)	3/242	NT	5.2%	coding (3/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 654774	52 (1.050)					intergenic (‑32/+213)	ctpL/PP_0563	methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator

GAACTGCTGGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCG  >  NC_002947/654596‑654885                                                                                                                                                 |                                                                                                                                                    gAACTGCTGGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAg                                                                                                                                                 >  4:245807/1‑149 (MQ=255)       ctgGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGATGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑a                                                                                                                                         <  2:210854/149‑1 (MQ=255)          ggACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑aa                                                                                                                                        <  7:147310/147‑1 (MQ=255)          ggACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACt                                                                                                                                      >  5:128352/1‑149 (MQ=255)            aCAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTc                                                                                                                                    <  3:245807/149‑1 (MQ=255)             cAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTcc                                                                                                                                   <  6:128352/149‑1 (MQ=255)                gCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTgc                                                                                                                                >  5:269013/1‑149 (MQ=255)                gCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGATGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTgc                                                                                                                                >  1:262340/1‑149 (MQ=255)                  ccAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTgcg                                                                                                                               >  8:185669/1‑148 (MQ=255)                            cTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGACAgg                                                                                                                    >  1:281377/1‑149 (MQ=255)                             tCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAg                                                                                                                            >  8:267776/1‑140 (MQ=255)                             tCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAg                                                                                                                            <  7:267776/140‑1 (MQ=255)                             tCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAgg                                                                                                                    >  5:319442/1‑148 (MQ=255)                                 tCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgc                                                                                                               <  2:215809‑M2/149‑3 (MQ=255)                                    gCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcc                                                                                                            <  1:170955‑M2/149‑6 (MQ=255)                                     cTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCctacctctcccctgcgcaggaagttcgcggctatgcgcct                                                                                                             <  6:226266‑M1/149‑41 (MQ=255)                                       ggTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctg                                                                                                          <  5:22869‑M2/148‑8 (MQ=255)                                        gTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGagag                                                                                                                     >  7:206614/1‑136 (MQ=255)                                        gTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGagag                                                                                                                     <  8:206614/136‑1 (MQ=255)                                          aGGGGCGTTCGCGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACAGACGGTCACCAGCAACAGCGTGTGGAATTTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTGCTGCGCAGGGGAGAGGTAGgcgcgtgaggg                                                                                                      <  6:21970‑M2/149‑12 (MQ=255)                                             ggCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAt                                                                                                   >  2:148272/1‑149 (MQ=255)                                              gCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAtt                                                                                                  <  1:317715/149‑1 (MQ=255)                                               cGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTg                                                                                                 <  7:185669/149‑1 (MQ=255)                                                    gAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGAtt                                                                                            >  8:302385/1‑149 (MQ=255)                                                      gggCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGAtttt                                                                                          <  1:215809/149‑1 (MQ=255)                                                       ggCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTtg                                                                                         <  6:69956/149‑1 (MQ=255)                                                        gcgcgcTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTtgt                                                                                        >  5:284645/1‑149 (MQ=255)                                                          gcgcTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGTCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGa                                                                                      >  1:129142/1‑149 (MQ=255)                                                                   ccaccaCAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                             >  3:256649/1‑149 (MQ=255)                                                                   ccaccaCAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGATGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                             <  2:262340/149‑1 (MQ=255)                                                                    caccacAGGGTGGCGCCCAAGGCGATACATACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGtgat                                                                             >  7:126967/1‑148 (MQ=255)                                                                    caccacAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCctacctctcccctgcgcaggaagttcgcggctatgcgcctgaagtg                                                                                                       <  8:4310‑M1/124‑47 (MQ=255)                                                                    caccacAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCctacctctcccctgcgcaggaagttcgcggctatgcgcctgaagtg                                                                                                       >  7:4310‑M1/1‑78 (MQ=255)                                                                      ccacAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGAc                                                                          >  1:186238/1‑149 (MQ=255)                                                                       cacaGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACg                                                                         >  5:122838/1‑149 (MQ=255)                                                                       cacaGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACg                                                                         >  5:1026/1‑149 (MQ=255)                                                                       cacaGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACg                                                                         >  7:225175/1‑149 (MQ=255)                                                                            ggTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGTGATTTTGTGACgg                                                                                   >  8:54888/1‑134 (MQ=255)                                                                            ggTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGTGATTTTGTGACgg                                                                                   <  7:54888/134‑1 (MQ=255)                                                                                  gcCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTg                                                              >  8:272454/1‑149 (MQ=255)                                                                                        ggCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCa                                                        <  6:269013/149‑1 (MQ=255)                                                                                        ggCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCa                                                        <  7:8353/149‑1 (MQ=255)                                                                                          cGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGGGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGc                                                                 >  7:58059/1‑138 (MQ=255)                                                                                          cGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGGGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGc                                                                 <  8:58059/138‑1 (MQ=255)                                                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaaaa                                                <  7:272454/149‑1 (MQ=255)                                                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaaaa                                                <  8:225175/149‑1 (MQ=255)                                                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaaaa                                                <  4:256649/149‑1 (MQ=255)                                                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaaaa                                                  >  5:137070/1‑147 (MQ=255)                                                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaa                                                    >  7:269133/1‑145 (MQ=255)                                                                                                acacGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGaaa                                                    <  8:269133/145‑1 (MQ=255)                                                                                                  acGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCGAAAAATACCTGCGCAGGGGAGAGGTAGGCGCGTGAAGTTATTGCGATTTTTTGACGGGGTAATGACGCCAGGGGATTGGTGACAGaaaaaaa                                                >  1:97750/1‑149 (MQ=255)                                                                                                  acGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGt                                              <  6:319442/149‑1 (MQ=255)                                                                                                  acGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGt                                              >  7:94804/1‑149 (MQ=255)                                                                                                      tCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGTCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGca                                          <  2:129142/149‑1 (MQ=255)                                                                                                      tCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGca                                          >  1:199505/1‑149 (MQ=255)                                                                                                      tCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGca                                          <  7:302385/149‑1 (MQ=255)                                                                                                           aGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTg                                     >  3:91144/1‑149 (MQ=255)                                                                                                            gCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTg                                     >  4:125915/1‑148 (MQ=255)                                                                                                                    gtgtTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTg                            <  6:137070/149‑1 (MQ=255)                                                                                                                      attGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGgt                          >  3:222106/2‑149 (MQ=255)                                                                                                                         gAAATTGGTGAGCCACTTGAGGCGGATAGCCGCG‑‑TACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGgtgt                        <  2:281377/148‑1 (MQ=255)                                                                                                                         gAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGgtgt                        <  6:22869/148‑1 (MQ=255)                                                                                                                           aaTTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGc                     <  2:97750/149‑1 (MQ=255)                                                                                                                                 tCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCAc               >  6:187746/1‑149 (MQ=255)                                                                                                                                 tCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCAc               <  8:94804/149‑1 (MQ=255)                                                                                                                                     ccACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGc           <  8:126967/149‑1 (MQ=255)                                                                                                                                      cACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtg                                   >  7:4310‑M2/1‑46 (MQ=255)                                                                                                                                      cACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtg                                   <  8:4310‑M2/124‑79 (MQ=255)                                                                                                                                      cACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGcc          <  6:122838/149‑1 (MQ=255)                                                                                                                                       ccctcacGCGCctacctctcccctgcgcagcaagttcgcggctatgcgcctgaagtggctgaccaaattccacacgctgttgctggtgaccgtctgtatcgccttgggcgccaccctgtggtggtcacagcgcgcccgcgaacgcccct           <  6:21970‑M1/146‑139 (MQ=255)                                                                                                                                        cTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCctc        <  4:91144/149‑1 (MQ=255)                                                                                                                                          tCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTAATGAGATTTTGAGACGTGGTGATGACGCAAGGGGATTGGTTTCAGAAAAAAAGTGGCACAGTGCCTAAATTCATATGGCCGGCACTGGCCTCtt      >  8:217705/1‑149 (MQ=255)                                                                                                                                           cAGGCGCctacctctcccctgcgcaggaagttcgcggctatgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctacc        <  5:22869‑M1/148‑142 (MQ=255)                                                                                                                                            aGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctaccag    <  6:226266‑M2/149‑110 (MQ=255)                                                                                                                                            aGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTcg    >  7:302768/1‑149 (MQ=255)                                                                                                                                             ggCGCctacctctcccctgcgcaggaagttcgcggctatgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctaccagc     <  1:170955‑M1/149‑145 (MQ=255)                                                                                                                                              gcgcATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTcgcg  >  2:230505/1‑149 (MQ=255)                                                                                                                                                gcctacctctcccctgcgcaggaagttcgcggctatgcgcctgaagtggctgaccaatttcaacacgctgttgctggtgaccgtgtgtatcgccttgggcgccaccctgtggtggtcacagcgcgccctcgaacgcccctaccagctga  <  2:215809‑M1/149‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GAACTGCTGGGACAGGCCCAGATAGCGCTCCATCAGCTGGTAGGGGCGTTCGAGGGCGCGCTGTGACCACCACAGGGTGGCGCCCAAGGCGATACACACGGTCACCAGCAACAGCGTGTTGAAATTGGTCAGCCACTTCAGGCGCATAGCCGCG‑‑AACTTCCTGCGCAGGGGAGAGGTAGGCGCCTGAAGTTATTGCGATTTTGTGACGGGGTGATGACGCCAGGGGCTTGGTGTCAGAAAAAAAGTGGCACAGTGCCTCCATTGGTGTGGCCGGCACTGGCCTCTTCGCG  >  NC_002947/654596‑654885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.