| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1095604 = | 58 (1.080) | 4 (0.080) | 4/250 | NT | 6.7% | coding (457/1494 nt) | rpoN | RNA polymerase sigma‑54 factor |
| ? | NC_002947 | 1095665 = | 56 (1.100) | coding (396/1494 nt) | rpoN | RNA polymerase sigma‑54 factor | |||||
TCCCGGTCGATACCGCTTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAACGATGACGACGAATGGGACTTCACCACGCGCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1095756‑1095604‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatgtGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCGGGAGCTCGTTGGGGATGCGCTCGCTCCACTCACCGTCTTCCAGGTTGTCGGCGCTGACG > NC_002947/1095665‑1095812 TCCCGGTCGATACCGCTTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAACGATGACGACGAATGGGACTTCACCACGCGCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACC > 8:188645/1‑148 CCCGGTCGATACCGCTTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAACGATGACGACGAATGGGACTTCACCACGCGCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGA > 1:310550/1‑149 CCGGTCGATACCGCTTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAACGATGACGACGAATGGGACTTCACCACGCGCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGAT > 2:259338/1‑149 CCGGTCGATACCGCTTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAACGATGACGACGAATGGGACTTCACCACGCGCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGAT < 4:327201/149‑1 GCGCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGATGTGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATC > 5:345124/1‑149 GCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGATGTGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGA > 5:295119/1‑149 CATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGATGTGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCG < 6:345124/149‑1 CCTGCTGTGGCAGTTGAACCTGGCACCGATGTGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCGGGAGCTCGTTGGGGATGCGCTCGCTCCA < 6:295119/149‑1 CGATGTGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCGGGAGCTCGTTGGGGATGCGCTCGCTCCACTCACCGTCTTCCAGGTTGTCGGCGC > 5:66883/1‑149 TGTGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCGGGAGCTCGTTGGGGATGCGCTCGCTCCACTCACCGTCTTCCAGGTTGTCGGCGCTGA < 3:327201/149‑1 TGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCGGGAGCTCGTTGGGGATGCGCTCGCTCCACTCACCGTCTTCCAGGTTGTCGGCGCTGACG < 3:321550/149‑1 TGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCGGGAGCTCGTTGGGGATGCGCTCGCTCCACTCACCGTCTTCCAGGTTGTCGGCGCTGACG < 8:67572/149‑1 TCCCGGTCGATACCGCTTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCGAGCAACGATGACGACGAATGGGACTTCACCACGCGCACATCGGCCGGCGAAAGCCTGCAAAGCCACCTGCTGTGGCAGTTGAACCTGGCACCGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1095756‑1095604‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatgtGCGCGTGGTGAAGTCCCATTCGTCGTCATCGTTGCTCGGCAGGCTGCTGGCGCTGGTCTGGTAGATGTCTTCCCAAGCGGTATCGACCGGGAGCTCGTTGGGGATGCGCTCGCTCCACTCACCGTCTTCCAGGTTGTCGGCGCTGACG > NC_002947/1095665‑1095812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |