New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1109505	44 (0.820)	4 (0.080)	4/256	NT	7.9%	coding (171/651 nt)	PP_0969	GntR family transcriptional regulator
	?	NC_002947	= 1109543	50 (0.960)					coding (209/651 nt)	PP_0969	GntR family transcriptional regulator

TCCCTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GT‑GCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1109359‑1109505 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgCCGTCGCCCTGGCGAATTTCCACCAGGCCACTGAACGCCAGCACGCGCAT  <  NC_002947/1109543‑1109494                                                                                                                                                                                                          TCCCTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GT‑GCTGCC                                                  >  2:257822/1‑149                                         TCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GT‑GCTGCCGTCGCCCTGGCGAATTTCCACCAGGCCACTGAACGCCAG           >  5:122309/1‑148                                           GTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GT‑GCTGCCGTCGCCCTGGCGAATTTCCACCAGGCCACTGAACGCCAGCA         <  1:257822/148‑1                                              TTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GT‑GCTGCCGTCGCCCTGGCGAATTTCCACCAGGCCACTGAACGCCAGCACGC      <  6:122309/148‑1                                                                                 CGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGCAGGTAGCTGCCGTCGCCCTGGCGAATTTCCACCAGGCCACTGAACGCCAGCACGCGCAT  <  2:101535/120‑1                                                                                                                                                                                                          TCCCTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GT‑GCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1109359‑1109505 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgCCGTCGCCCTGGCGAATTTCCACCAGGCCACTGAACGCCAGCACGCGCAT  <  NC_002947/1109543‑1109494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.