New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 110950544 (0.820)4 (0.080) 4/256 NT 7.9% coding (171/651 nt) PP_0969 GntR family transcriptional regulator
?NC_002947 = 1109543 50 (0.960)coding (209/651 nt) PP_0969 GntR family transcriptional regulator

TCCCTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATTCTCGAGGCGGAGGCCGTC  >  NC_002947/1109359‑1109652
                                                                                                                                                     |                                                                                                                                                   
tCCCTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGcc                                                                                                                                                   >  2:257822‑M1/1‑147 (MQ=255)
  ccTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTTTTGGGAGATTGGCAGGTCGGTCAGCGCCTGCCTACAGAGCCAGAGCATGCCTTGCAGCTGGGAATCAGCCGCAACAACGTGCGAGAGGCCAAGCGC‑‑GTGCTGGCGt                                                                                                                                                 >  2:247839/1‑149 (MQ=255)
   cTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGtt                                                                                                                                                <  2:232458/149‑1 (MQ=255)
       tggAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGt                                                                                                                                            <  1:34413/149‑1 (MQ=255)
               gCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCNTTGNANCTGGNCATCNGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    <  5:275883/149‑1 (MQ=255)
               gCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    >  6:1872/1‑149 (MQ=255)
               gCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    <  5:271204/149‑1 (MQ=255)
               gCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    <  5:272568/149‑1 (MQ=255)
               gCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    <  4:284379/149‑1 (MQ=255)
               gCGGTAGAGCGCATGCGCGAATGCATCGTGGTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    <  4:57881/149‑1 (MQ=255)
                      agCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    >  7:249290/1‑142 (MQ=255)
                      agCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCtggt                                                                                                                                    <  8:249290/142‑1 (MQ=255)
                       gcgcATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTc                                                                                                                            <  5:1872/149‑1 (MQ=255)
                             gcgcGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTg                                                                                                                                           <  3:11616/128‑1 (MQ=255)
                             gcgcGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTg                                                                                                                                           >  4:11616/1‑128 (MQ=255)
                              cgcgAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAggg                                                                                                                     <  8:154834/149‑1 (MQ=255)
                                        tCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGccgtcgccctggcgaatttccaccaggccactgaacgccag                                                                                                            >  5:122309‑M1/1‑107 (MQ=255)
                                          gtgtTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGccgtcgccctggcgaatttccaccaggccactgaacgccagca                                                                                                          <  1:257822‑M1/148‑44 (MQ=255)
                                             ttGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGccgtcgccctggcgaatttccaccaggccactgaacgccagcacgc                                                                                                       <  6:122309‑M1/148‑47 (MQ=255)
                                                  cGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGGTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCa                                                                                                 <  6:320312/149‑1 (MQ=255)
                                                   gATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTAc                                                                                                        <  2:183495/141‑1 (MQ=255)
                                                   gATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTAc                                                                                                        >  1:183495/1‑141 (MQ=255)
                                                        gCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGcc                                                                                            >  3:299071/1‑148 (MQ=255)
                                                        gCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAAATCGCCAGGGCGACGGCAGCTACCTGCGCACTGcc                                                                                            >  1:278577/1‑148 (MQ=255)
                                                            gtcggtcAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGa                                                                                       >  3:259176/1‑149 (MQ=255)
                                                               ggtcAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGAccc                                                                                    >  2:289658/1‑149 (MQ=255)
                                                                 tcAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGc                                                                                  >  5:280217/1‑149 (MQ=255)
                                                                    gcgcCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTg                                                                                >  4:256674/1‑148 (MQ=255)
                                                                               ccGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGc                                                                               >  2:297588/1‑138 (MQ=255)
                                                                                cGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGCAGGTAGCTGccgtcgccctggcgaatttccaccaggccactgaacgccagcacgcgcat                                                                                                   <  2:101535‑M1/120‑51 (MQ=255)
                                                                                cGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCgg                                                                         <  7:305066/143‑1 (MQ=255)
                                                                                cGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCgg                                                                         >  8:305066/1‑143 (MQ=255)
                                                                                cGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCAcg                                                                   >  8:82052/1‑149 (MQ=255)
                                                                                            tgccttgcAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGgt                                                       >  3:40833/1‑149 (MQ=255)
                                                                                             gccttgcAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGgt                                                       <  4:299071/148‑1 (MQ=255)
                                                                                              ccttgcAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGgtgt                                                     <  4:196684/149‑1 (MQ=255)
                                                                                                           cATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAgg                                        <  6:280217/149‑1 (MQ=255)
                                                                                                               aGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCa                                                                     >  4:294393/1‑116 (MQ=255)
                                                                                                               aGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCa                                                                     <  3:294393/116‑1 (MQ=255)
                                                                                                                   gCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAg                                            <  4:238242/137‑1 (MQ=255)
                                                                                                                   gCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAgatcgga                                   >  3:238242/1‑140 (MQ=255)
                                                                                                                   gCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGa                                 >  5:105534/1‑148 (MQ=255)
                                                                                                                   gCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGa                                 >  4:225420/1‑148 (MQ=255)
                                                                                                                        acCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCg                           <  4:259176/149‑1 (MQ=255)
                                                                                                                               gtgAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCACCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATAtt                    >  6:197857/1‑149 (MQ=255)
                                                                                                                                 gAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCACTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATtct                  >  8:242538/1‑149 (MQ=255)
                                                                                                                                    gCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCAGGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATtctc                 >  1:278043/1‑147 (MQ=255)
                                                                                                                                    gCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATtctc                 >  6:336394/1‑147 (MQ=255)
                                                                                                                                      cATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATTCTCGAgg             <  3:256674/149‑1 (MQ=255)
                                                                                                                                      cATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATTCTCGAgg             <  4:40833/149‑1 (MQ=255)
                                                                                                                                       aTGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGcagctacctgcgcatggcctcacgcacggtgttgcggctgatgcccagctgcaaggcaagctctggctcg                                         <  2:101535‑M2/120‑71 (MQ=255)
                                                                                                                                           gc‑‑gTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGcagcacgcgcatggcctcacgcacggtgttgcggctgatgcccagctgcaaggcaagctctggctcggtaggcaggcgctgaccgacctgccaatcgcccaa         <  6:122309‑M2/148‑103 (MQ=255)
                                                                                                                                           gc‑‑gTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATTCTCGAGGCGGAg        <  7:137654/149‑1 (MQ=255)
                                                                                                                                                tGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGcagcacgcgcatggcctcacgcacggtgttgcggctgatgcccagctgcaaggcaagctctggctcggtaggcaggcgctgaccgacctgccaatcgcccaacac      <  1:257822‑M2/148‑106 (MQ=255)
                                                                                                                                                   cTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGcagcacgcgcatggcctcacgcacggtgttgcggctgatgcccagctgcaaggcaagctctggctcggtaggcaggcgctgaccgacctgccaatcgcccaacacga    >  5:122309‑M2/1‑41 (MQ=255)
                                                                                                                                                    tGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATTCTCGAGGCGGAGGCCGTc  >  8:303074/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
TCCCTGGTGGAGTTGGCGGTAGAGCGCATGCGCGAATGCATCGTGTTGGGCGATTGGCAGGTCGGTCAGCGCCTGCCTACCGAGCCAGAGCTTGCCTTGCAGCTGGGCATCAGCCGCAACACCGTGCGTGAGGCCATGCGC‑‑GTGCTGGCGTTCAGTGGCCTGGTGGAAATTCGCCAGGGCGACGGCAGCTACCTGCGCACTGCCCAGGACCCGCTGCAGGCGGTGCACGCGATGTCCCGGTGTACGCCCGAGCAGGCCCGTGAAACCCGCCATATTCTCGAGGCGGAGGCCGTC  >  NC_002947/1109359‑1109652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.