New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1312979	45 (0.840)	6 (0.120)	5/250	NT	11.6%	coding (1678/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	= 1313030	49 (0.960)					coding (1627/2847 nt)	rapA	RNA polymerase‑associated protein RapA

CTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1312826‑1312979 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggtgCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATCCAGTTG  <  NC_002947/1313030‑1312884                                                                                                                                                                                                                                                                                                               CTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCAC                                                                                                                                                           >  5:342598/1‑148  TTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCA                                                                                                                                                         <  7:241080/149‑1  TTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCAC                                                                                                                                                           >  6:281225/1‑147     GTGATACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGT                                                                                                                                                      >  2:87243/1‑149             ACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGCTGATCT                                                                                                                                              >  5:131597/1‑149               TGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGCTGATCTGC                                                                                                                                            >  5:335755/1‑149               TGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAG                                                                                                                                                        <  6:326276/137‑1               TGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAG                                                                                                                                                        >  5:326276/1‑137                                         CTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCA                                                                                                                   >  8:64180/1‑148                                                                 GATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTG                                                                                            <  6:335755/147‑1                                                                     GTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGAT                                                                                       <  6:131597/148‑1                                                                     GTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGAT                                                                                       <  7:64180/148‑1                                                                                   GATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCA                                                                                                                                                         >  6:167198/1‑68                                                                                   GATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCA                                                                                                                                                         <  5:167198/68‑1                                                                                                                                                    CCAGGTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATC        >  7:143813/1‑148                                                                                                                                                        GTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATCCAGTT   >  4:36100/1‑149                                                                                                                                                        GTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATCCAGTT   <  8:143813/149‑1                                                                                                                                                        GTGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATCCAGTT   <  1:245093/149‑1                                                                                                                                                         TGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATCCAGTTG  <  5:37387/149‑1                                                                                                                                                         TGCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATCCAGTTG  <  3:36100/149‑1                                                                                                                                                                                                                                                                                                               CTTCGTGGTACCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1312826‑1312979 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggtgCTGATCTGCTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCGCTCATCACCTGGTGATGTTCGACCTGCCGGCGCACCCCGACCTGCTCGAACAGCGCATCGGCCGCCTTGACCGGATCGGCCAGAAGCACACTATCCAGTTG  <  NC_002947/1313030‑1312884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.