New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1312979	45 (0.840)	6 (0.120)	5/250	NT	11.6%	coding (1678/2847 nt)	rapA	RNA polymerase‑associated protein RapA
	?	NC_002947	= 1313030	49 (0.960)					coding (1627/2847 nt)	rapA	RNA polymerase‑associated protein RapA

CCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGAACACCGAGGCCGGGATGCC  >  NC_002947/1312836‑1313126                                                                                                                                                |                                                                                                                                                    ccACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGtgatga                                                                                                                                                 <  5:281225/148‑1 (MQ=255) ccACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACAAGGTCATGAg                                                                                                                                                >  4:215856/1‑149 (MQ=255)   aCTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGctgatct                                                                                                                                              >  5:131597‑M1/1‑142 (MQ=255)     tGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGctgatctgc                                                                                                                                            >  5:335755‑M1/1‑140 (MQ=255)             gcgcTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGt                                                                                                                                    >  4:273774/1‑149 (MQ=255)                ctctTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGc                                                                                                                                 <  4:235222/149‑1 (MQ=255)                   ttGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGc                                                                                                                              >  3:270191/1‑149 (MQ=255)                      cGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAAc                                                                                                                                           >  1:234441/1‑133 (MQ=255)                      cGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAAc                                                                                                                                           <  2:234441/133‑1 (MQ=255)                         gCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGc                                                                                                                        <  6:342598/149‑1 (MQ=255)                             tCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGcc                                                                                                                    >  6:303246/1‑149 (MQ=255)                               cTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGctgatctgctcggaaatcggcagcgaaggccgca                                                                                                                   >  8:64180‑M1/1‑114 (MQ=255)                                 gCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGAtt                                                                                                                >  5:232945/1‑149 (MQ=255)                                    ggTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTcc                                                                                                             <  1:87243/149‑1 (MQ=255)                                    ggTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTcc                                                                                                             <  1:146140/149‑1 (MQ=255)                                     gTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTcc                                                                                                             >  6:346273/1‑148 (MQ=255)                                      tACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGa                                                                                                           <  1:307403/149‑1 (MQ=255)                                       aCGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGGCGAAAATCACCAGGTGATGAGCGAACTGGAAGTAGCGGCCTTCGCTGCCGATTTCCGa                                                                                                           <  3:23883/148‑1 (MQ=255)                                         gggATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCa                                                                                                        <  5:303246/149‑1 (MQ=255)                                                 cAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGca                                                                                                <  5:37387‑M2/149‑3 (MQ=255)                                                 cAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGca                                                                                                <  3:36100‑M2/149‑3 (MQ=255)                                                  aaCTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAg                                                                                                  <  1:142793/146‑1 (MQ=255)                                                  aaCTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAg                                                                                                  >  2:142793/1‑146 (MQ=255)                                                  aaCTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGcac                                                                                               >  4:36100‑M2/1‑146 (MQ=255)                                                  aaCTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGcac                                                                                               <  8:143813‑M2/149‑4 (MQ=255)                                                  aaCTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGcac                                                                                               <  1:245093‑M2/149‑4 (MQ=255)                                                       gATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctg                                                                                            <  6:335755‑M1/147‑58 (MQ=255)                                                       gATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGcacctgg                                                                                           >  7:143813‑M2/1‑141 (MQ=255)                                                          aGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATc                                                                                                    <  8:170739/136‑1 (MQ=255)                                                          aGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGAGGCCTTCGCTGCCGATTTCCGAGCAGATc                                                                                                    >  7:170739/1‑136 (MQ=255)                                                           gtgtGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgat                                                                                       <  6:131597‑M1/148‑63 (MQ=255)                                                           gtgtGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgat                                                                                       <  7:64180‑M1/148‑63 (MQ=255)                                                            tgtgCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGcc                                                                                      >  1:71133/1‑148 (MQ=255)                                                                      gCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCAt                                                                           >  1:327731/1‑149 (MQ=255)                                                                       ccGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATc                                                                          >  6:229490/1‑149 (MQ=255)                                                                       ccGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATc                                                                          >  8:108055/1‑149 (MQ=255)                                                                                  aaGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAgg                                                               <  6:37387/149‑1 (MQ=255)                                                                                        gcCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCgg                                                         >  4:240463/1‑149 (MQ=255)                                                                                           gATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCAc                                                      <  3:240463/149‑1 (MQ=255)                                                                                               cgcTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTc                                                  >  2:241312/1‑149 (MQ=255)                                                                                                gcTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAg                                                            >  6:68591/1‑138 (MQ=255)                                                                                                gcTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAg                                                            <  5:68591/138‑1 (MQ=255)                                                                                                      cGAGCAGGTCGGGGTGCGCCGGCAGTTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTc                                            <  8:29624/148‑1 (MQ=255)                                                                                                         gCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAg                                                                                                          <  3:237396/83‑1 (MQ=255)                                                                                                         gCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAg                                                                                                          >  4:237396/1‑83 (MQ=255)                                                                                                             gTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGc                                    >  2:329251/1‑149 (MQ=255)                                                                                                              tCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCt                                   >  3:120055/1‑149 (MQ=255)                                                                                                                 gggTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCAt                                <  1:329251/149‑1 (MQ=255)                                                                                                                          ggCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATg                       <  3:273774/149‑1 (MQ=255)                                                                                                                             aGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGaa                    <  8:148574/149‑1 (MQ=255)                                                                                                                              ggTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGAac                   <  6:232945/149‑1 (MQ=255)                                                                                                                               gTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGaa                    <  2:34325/147‑1 (MQ=255)                                                                                                                               gTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGaa                    >  1:34325/1‑147 (MQ=255)                                                                                                                                  gAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGAACAcc                >  7:101413/1‑148 (MQ=255)                                                                                                                                  gAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACCGTCGCGCTCGAGGATGCTCATGCCTTCATGGAACAcc                >  1:115148/1‑148 (MQ=255)                                                                                                                                      aTCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacac            <  6:131597‑M2/148‑87 (MQ=255)                                                                                                                                      aTCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacac            <  7:64180‑M2/148‑87 (MQ=255)                                                                                                                                          ccAGGTGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacactatc        >  7:143813‑M1/1‑7 (MQ=255)                                                                                                                                          ccAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAgg                                        >  4:119696/1‑116 (MQ=255)                                                                                                                                          ccAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAgg                                        <  3:119696/116‑1 (MQ=255)                                                                                                                                          ccAGGTGATGAGCGAACGGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGAACACCGAGGCCg         <  5:94548/147‑1 (MQ=255)                                                                                                                                          ccAGGTGATGAGCGAACAGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGAACACCGAGGCCg         >  6:94548/1‑147 (MQ=255)                                                                                                                                           cAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacactatc        <  6:335755‑M2/147‑91 (MQ=255)                                                                                                                                            aGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGAACACCGAGGCAGGGAt     >  5:320925/1‑149 (MQ=255)                                                                                                                                              gTGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacactatccagtt   <  1:245093‑M1/149‑147 (MQ=255)                                                                                                                                              gTGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacactatccagtt   <  8:143813‑M1/149‑147 (MQ=255)                                                                                                                                              gTGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacactatccagtt   >  4:36100‑M1/1‑3 (MQ=255)                                                                                                                                               tGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacactatccagttg  <  5:37387‑M1/149‑148 (MQ=255)                                                                                                                                               tGctgatctgctcggaaatcggcagcgaaggccgcaacttccagttcgctcatcacctggtgatgttcgacctgccggcgcaccccgacctgctcgaacagcgcatcggccgccttgaccggatcggccagaagcacactatccagttg  <  3:36100‑M1/149‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                    CCACTGGAACAGGCGCTCTTGCGGGCTGTCCTGCAGGTACGGGATGTGCAACTGGATAGTGTGCTTCTGGCCGATCCGGTCAAGGCGGCCGATGCGCTGTTCGAGCAGGTCGGGGTGCGCCGGCAGGTCGAACATCACCAGGTGATGAGCGAACTGGAAGTTGCGGCCTTCGCTGCCGATTTCCGAGCAGATCAGCACCTGGGCGCCAAACTCTTCATCGGCAAAGTAGGCAGCGGCACGGTCGCGCTCGAGGATGCTCATGCCTTCATGGAACACCGAGGCCGGGATGCC  >  NC_002947/1312836‑1313126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.