New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1388660	43 (0.800)	3 (0.060)	3/254	NT	6.5%	intergenic (‑171/‑111)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein
	?	NC_002947	= 1388703	45 (0.870)					intergenic (‑214/‑68)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein

GCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1388513‑1388660 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcaTGCCGCATGTGACATGGCGCAATACATTGCCCACTGGGCGGCCTGCGGTT  <  NC_002947/1388703‑1388654                                                                                                                                                                                                        GCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAT                                                   >  8:9532/1‑149                                             GAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCATGCCGCATGTGACATGGCGCAATACATTGCCCACTGGGCGGCCTG       <  7:9532/149‑1                                                 GCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCATGCCGCATGTGACATGGCGCAATACATTGCCCACTGGGCGGCCTGCGGT   <  4:140328/149‑1                                                  CGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGCGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCATGCCGCATGTGACATGGCGCAATACATTGCCCACTGGGCGGCCTGCGGTT  <  8:178296/149‑1                                                                                                                                                                                                        GCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1388513‑1388660 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcaTGCCGCATGTGACATGGCGCAATACATTGCCCACTGGGCGGCCTGCGGTT  <  NC_002947/1388703‑1388654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.