New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1388660	43 (0.800)	3 (0.060)	3/254	NT	6.5%	intergenic (‑171/‑111)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein
	?	NC_002947	= 1388703	45 (0.870)					intergenic (‑214/‑68)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein

TAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGCCTGTTGTCGGATACCTAC  >  NC_002947/1388555‑1388851                                                                                                                                                     |                                                                                                                                                     taGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCAcatgcggca                                                                                                                                                      >  4:111411/1‑149 (MQ=255)         gAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACatgcggcatgcggc                                                                                                                                                >  1:207306/1‑147 (MQ=255)               gTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAgt                                                                                                                                            >  1:288137/1‑145 (MQ=255)               gTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAgt                                                                                                                                            <  2:288137/145‑1 (MQ=255)                tGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGc                                                                                                                                       >  7:100520/1‑149 (MQ=255)                tGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGc                                                                                                                                       <  3:111411/149‑1 (MQ=255)                 ggCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGc                                                                                                                                       >  8:297655/1‑148 (MQ=255)                    aGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCCCACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTa                                                                                                                                     >  1:316771/1‑147 (MQ=255)                      gCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGt                                                                                                                                 >  5:139957/1‑149 (MQ=255)                         aGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGt                                                                                                                              <  8:100520/149‑1 (MQ=255)                               tGCACCCGGCAATGACAGTCCGGACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCAACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGc                                                                                                                          <  6:47582/147‑1 (MQ=255)                               tGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCa                                                                                                                         <  2:37796/148‑1 (MQ=255)                                  aCCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCg                                                                                                                     >  3:225111/1‑149 (MQ=255)                                                 tCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGcc                                                                                                      >  7:156022/1‑149 (MQ=255)                                                     cACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtgt                                                                                                  <  3:142670/149‑1 (MQ=255)                                                     cACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtgt                                                                                                  <  7:297655/149‑1 (MQ=255)                                                       cGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtgtg                                                                                                 >  1:167432/1‑148 (MQ=255)                                                             gCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAggg                                                                                          >  8:46072/1‑149 (MQ=255)                                                               acacTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGa                                                                                        <  6:139957/149‑1 (MQ=255)                                                                        aTTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATgg                                                                               >  5:149489/1‑149 (MQ=255)                                                                            aaCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCa                                                                                                                         <  4:249136/103‑1 (MQ=255)                                                                             aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAAt                                                                           <  6:149489/148‑1 (MQ=255)                                                                             aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                                                                          >  5:73926/1‑149 (MQ=255)                                                                             aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                                                                          <  6:294152/149‑1 (MQ=255)                                                                             aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                                                                          <  2:207306/149‑1 (MQ=255)                                                                             aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                                                                          <  4:259656/149‑1 (MQ=255)                                                                             aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                                                                          <  4:225111/149‑1 (MQ=255)                                                                                   aaGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATc                                                                    <  5:287807/149‑1 (MQ=255)                                                                                          aGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTAt                                                               >  4:128737/1‑147 (MQ=255)                                                                                                cTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTga                                                         <  5:299471/147‑1 (MQ=255)                                                                                                 tCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTgaag                                                       >  8:306733/1‑148 (MQ=255)                                                                                                 tCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTgaag                                                       >  1:313149/1‑148 (MQ=255)                                                                                                  cAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtg                                                                                                   >  4:14442/1‑103 (MQ=255)                                                                                                  cAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtg                                                                                                   <  3:14442/103‑1 (MQ=255)                                                                                                  cAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTgaag                                                       >  5:240978/1‑147 (MQ=255)                                                                                                    aaCCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCAtgcggtttgagtaggctgcggctttactgttaaataggcagtgtgccgcccgtgcggactgtcattgccgggtgcataggctggcctgccacgtgttcg                                                   <  8:178296‑M2/149‑100 (MQ=255)                                                                                                     aCCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCAtgcggtttgagtaggctgcggctttactgttaaataggcagtgtgccacccgtgcggactgtcattgccgggtgcataggctggcctgccacgtgttcgc                                                  <  4:140328‑M2/149‑101 (MQ=255)                                                                                                      ccGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATc                                                 <  6:73926/149‑1 (MQ=255)                                                                                                       cGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGa                                                                                        <  3:79592/109‑1 (MQ=255)                                                                                                       cGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGa                                                                                        >  4:79592/1‑109 (MQ=255)                                                                                                         cAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCAtgcggtttgagtaggctgcggctttactgttaaataggcagtgtgccacccgtgcggactgtcattgccgggtgcataggctggcctgccacgtgttcgcgctc                                              <  7:9532‑M2/149‑105 (MQ=255)                                                                                                                       ggCAATGTATTGCGCCATGTCACATGCGTCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCg                                                                   >  2:195123/1‑114 (MQ=255)                                                                                                                       ggCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGa                                 <  3:160096/148‑1 (MQ=255)                                                                                                                              tATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGt                         >  1:96048/1‑149 (MQ=255)                                                                                                                                   cgcCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGc                    >  7:139319/1‑149 (MQ=255)                                                                                                                                   cgcCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGc                    <  6:240978/149‑1 (MQ=255)                                                                                                                                     ccATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGcgt                  >  7:226711/1‑147 (MQ=255)                                                                                                                                      cATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGCCtg                 <  7:46072/149‑1 (MQ=255)                                                                                                                                      cATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGCCtg                 <  7:306733/149‑1 (MQ=255)                                                                                                                                      cATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGCCtg                 <  2:167432/149‑1 (MQ=255)                                                                                                                                       aTGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGCCtgt                <  3:128737/149‑1 (MQ=255)                                                                                                                                               tgcggcatgcggcaAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTAAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGCCTGTTGTCGGAt        <  8:156022/149‑1 (MQ=255)                                                                                                                                                     atgcggtttgagtaggctgcggctttactgttaaataggcagtgtgccacccgtgcggactgtcattgccgggtgcataggctggcctgccacgtgttcgcgctctatatctcatgcgcaccgtgctgccagctcttcctgtgatcggc  >  8:9532‑M2/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCAAGTCCATCGTCGATGGGCTGTCCCGCCTGTTGTCGGATACCTAC  >  NC_002947/1388555‑1388851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.