New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1388660	43 (0.800)	3 (0.060)	3/254	NT	6.5%	intergenic (‑171/‑111)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein
	?	NC_002947	= 1388703	45 (0.870)					intergenic (‑214/‑68)	PP_1209/dps	cold‑shock protein/DNA‑binding stress protein

GCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCA  >  NC_002947/1388513‑1388807                                                                                                                                                    |                                                                                                                                                    gCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAt                                                                                                                                                    >  8:9532‑M1/1‑148 (MQ=255)        acaGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGgccgcc                                                                                                                                              >  6:287807/1‑148 (MQ=255)          aGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAg                                                                                                                                           >  6:299471/1‑149 (MQ=255)          aGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAg                                                                                                                                           >  4:179737/1‑149 (MQ=255)             aaGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTgg                                                                                                                                        <  3:179737/149‑1 (MQ=255)                     gcagcaCGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAAt                                                                                                                                   >  8:184007/1‑146 (MQ=255)                     gcagcaCGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAAt                                                                                                                                   <  7:184007/146‑1 (MQ=255)                     gcagcaCGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTa                                                                                                                                >  5:294152/1‑149 (MQ=255)                     gcagcaCGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCAACTCAAACCGCAGGCCGCCCAGTGGGCAATGTa                                                                                                                                >  5:47582/1‑149 (MQ=255)                                           taGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCAcatgcggca                                                                                                          >  4:111411/1‑149 (MQ=255)                                             gagCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAtgccgcatgtgacatggcgcaatacattgcccactgggcggcctg                                                                                                        <  7:9532‑M1/149‑46 (MQ=255)                                                 gcgAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAtgccgcatgtgacatggcgcaatacattgcccactgggcggcctgcggt                                                                                                    <  4:140328‑M1/149‑50 (MQ=255)                                                  cgAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGCGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAtgccgcatgtgacatggcgcaatacattgcccactgggcggcctgcggtt                                                                                                   <  8:178296‑M1/149‑51 (MQ=255)                                                   gAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACatgcggcatgcggc                                                                                                    >  1:207306/1‑147 (MQ=255)                                                         gTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAgt                                                                                                <  2:288137/145‑1 (MQ=255)                                                         gTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAgt                                                                                                >  1:288137/1‑145 (MQ=255)                                                          tGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGc                                                                                           <  3:111411/149‑1 (MQ=255)                                                          tGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGc                                                                                           >  7:100520/1‑149 (MQ=255)                                                           ggCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGc                                                                                           >  8:297655/1‑148 (MQ=255)                                                              aGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCCCACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTa                                                                                         >  1:316771/1‑147 (MQ=255)                                                                gCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGt                                                                                     >  5:139957/1‑149 (MQ=255)                                                                   aGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGt                                                                                  <  8:100520/149‑1 (MQ=255)                                                                         tGCACCCGGCAATGACAGTCCGGACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCAACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGc                                                                              <  6:47582/147‑1 (MQ=255)                                                                         tGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCa                                                                             <  2:37796/148‑1 (MQ=255)                                                                            aCCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCg                                                                         >  3:225111/1‑149 (MQ=255)                                                                                           tCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGcc                                                          >  7:156022/1‑149 (MQ=255)                                                                                               cACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtgt                                                      <  7:297655/149‑1 (MQ=255)                                                                                               cACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtgt                                                      <  3:142670/149‑1 (MQ=255)                                                                                                 cGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtgtg                                                     >  1:167432/1‑148 (MQ=255)                                                                                                       gCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAggg                                              >  8:46072/1‑149 (MQ=255)                                                                                                         acacTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGa                                            <  6:139957/149‑1 (MQ=255)                                                                                                                  aTTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATgg                                   >  5:149489/1‑149 (MQ=255)                                                                                                                      aaCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCa                                                                             <  4:249136/103‑1 (MQ=255)                                                                                                                       aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAAt                               <  6:149489/148‑1 (MQ=255)                                                                                                                       aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                              <  6:294152/149‑1 (MQ=255)                                                                                                                       aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                              <  4:225111/149‑1 (MQ=255)                                                                                                                       aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                              <  4:259656/149‑1 (MQ=255)                                                                                                                       aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                              <  2:207306/149‑1 (MQ=255)                                                                                                                       aCAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATc                              >  5:73926/1‑149 (MQ=255)                                                                                                                             aaGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATc                        <  5:287807/149‑1 (MQ=255)                                                                                                                                    aGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTAt                   >  4:128737/1‑147 (MQ=255)                                                                                                                                          cTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTga             <  5:299471/147‑1 (MQ=255)                                                                                                                                           tCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTgaag           >  1:313149/1‑148 (MQ=255)                                                                                                                                           tCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTgaag           >  8:306733/1‑148 (MQ=255)                                                                                                                                            cAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtg                                                       <  3:14442/103‑1 (MQ=255)                                                                                                                                            cAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTtg                                                       >  4:14442/1‑103 (MQ=255)                                                                                                                                            cAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTgaag           >  5:240978/1‑147 (MQ=255)                                                                                                                                              aaCCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCAtgcggtttgagtaggctgcggctttactgttaaataggcagtgtgccgcccgtgcggactgtcattgccgggtgcataggctggcctgccacgtgttcg       <  8:178296‑M2/149‑100 (MQ=255)                                                                                                                                               aCCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCAtgcggtttgagtaggctgcggctttactgttaaataggcagtgtgccacccgtgcggactgtcattgccgggtgcataggctggcctgccacgtgttcgc      <  4:140328‑M2/149‑101 (MQ=255)                                                                                                                                                ccGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATc     <  6:73926/149‑1 (MQ=255)                                                                                                                                                 cGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGa                                            >  4:79592/1‑109 (MQ=255)                                                                                                                                                 cGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGa                                            <  3:79592/109‑1 (MQ=255)                                                                                                                                                   cAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCAtgcggtttgagtaggctgcggctttactgttaaataggcagtgtgccacccgtgcggactgtcattgccgggtgcataggctggcctgccacgtgttcgcgctc  <  7:9532‑M2/149‑105 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGACAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTGCGCCATGTCACATGCGGCATGCGGCAAGTGTTGCTACAGTGGTCGGCACCCGCTTGAGTCTCAAGCCTTGTGGAAAGGGGAGCTTCATGGCAATCGATATCGGTATCAGTGAAGAAGATCGCA  >  NC_002947/1388513‑1388807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.