New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1404387	60 (1.110)	4 (0.080)	4/258	NT	6.6%	coding (1295/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 1404422	54 (1.030)					coding (1260/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer

GCGGCGCGTGCGGCCTGGGCCGCCTGCGATGCGTTGTGGGCGACATCCAGGGCGGTGGCGCTCATTTCGTTGGCAGCTGTAGCCACCTGTTCGATTTCGCGATGCTGTTGCTGCATGCCGTCGCTGGTCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1404255‑1404387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGCAATACCGCCGACCAATCGGCCGCCATTGCCAGCCAGACC  <  NC_002947/1404422‑1404380                                                                                                                                                                                  GCGGCGCGTGCGGCCTGGGCCGCCTGCGATGCGTTGTGGGCGACATCCAGGGCGGTGGCGCTCATTTCGTTGGCAGCTGTAGCCACCTGTTCGATTTCGCGATGCTGTTGCTGCATGCCGTCGCTGGTCTGGCCCGCAATACCGCCGAC                             >  4:269559/1‑149                          GCGATGCGTTGTGGGCGACATCCAGGGCGGTGGCGCTCATTTCGTTGGCAGCTGTAGCCACCTGTTCGATTTCGCGATGCTGTTGCTGCATGCCGTCGCTGGTCTGGCCCGCAATACCGCCGACCAATCGGCCGCCATTGCCAGCCAGA    >  1:249062/1‑149                          GCGATGCGTTGTGGGCGACATCCAGGGCGGTGGCGCTCATTTCGTTGGCAGCTGTAGCCACCTGTTCGATTTCGCGATGCTGTTGCTGCATGCCGTCGCTGGTCTGGCCCGCAATACCGCCGACCAATCGGCCGCCATTGCCAGCCAGA    <  3:269559/149‑1                            GATGCGTTGTGGGCGACATCCAGGGCGGTGGCGCTCATTTCGTTGGCAGCTGTAGCCACCTGTTCGATTTCGCGATGCTGTTGCTGCATGCCGTCGCTGGTCTGGCCCGCAATACCGCCGACCAATCGGCCGCCATTGCCAGCCAGACC  <  2:249062/149‑1                                                                                                                                                                                  GCGGCGCGTGCGGCCTGGGCCGCCTGCGATGCGTTGTGGGCGACATCCAGGGCGGTGGCGCTCATTTCGTTGGCAGCTGTAGCCACCTGTTCGATTTCGCGATGCTGTTGCTGCATGCCGTCGCTGGTCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1404255‑1404387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGCAATACCGCCGACCAATCGGCCGCCATTGCCAGCCAGACC  <  NC_002947/1404422‑1404380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.