New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1413680	59 (1.100)	4 (0.080)	4/258	NT	6.3%	coding (217/474 nt)	PP_1235	AhpC/TSA family protein
	?	NC_002947	= 1413722	61 (1.160)					coding (175/474 nt)	PP_1235	AhpC/TSA family protein

AGGTGCTGCGGTCAACGCCCATGTACTCCTTGCCATACAGCTTCTTCAGCTTGATCACGTCGAACAGCTGGCACAGGGCCTCGTCCTTGTCGCTG‑‑ATC‑AGCTCGAACGGGAAGCCTTGCTTGGCCTTGAAGTTCTCGTGCGACTTGATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1413530‑1413680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccTTCGCCGCGGCCAACACCGTGATATTCGGTGTGTCGCGTGATGGCATCAAGT  <  NC_002947/1413722‑1413671                                                                                                                                                                                                                AGGTGCTGCGGTCAACGCCCATGTACTCCTTGCCATACAGCTTCTTCAGCTTGATCACGTCGAACAGCTGGCACAGGGCCTCGTCCTTGTCGCTG‑‑ATC‑AGCTCGAACGGGAAGCCTTGCTTGGCCTTGAAGTTCTCGTGCGACTTGATG                                                        <  8:310572/149‑1                                                AGCTTGATCACGTCGAACATCTGGCACATGGCCTCGTCCTTGTCGCTGTCCTCGAGCTCGATCGGGAAGCCTTGCTTGGCCTTGAAGTTCTCGTGCGACTTGATGCCATC‑ACGCGGCCAACACCGTGATATTCGGTGTGTCGCGTGATG           <  1:110809/149‑1                                                       TCACGTCGAACAGCTGGCACAGGGCCTCGTCCTTGTCGCTG‑‑ATC‑AGCTCGAAGGGGAAGCCTTGCTTGGCGTTGAAGTTCTCGTGCGACTTGATGCCTTCGCCGCGGCCAACACCGTGATATTCGGTGTGTCGCGTGATGGCATCAAGT  <  6:105322/149‑1                                                              GAACAGCTGGCACAGGGCCTCGTCCTTGTCGCTG‑‑ATC‑AGCTCGAACGGGAAGCCTTGCTTGGCCTTGAAGTTCTCGTGCGACTTGATGCCTTCGCCGCGGCCAACACCGTGATATTCGGTGTGTCGCGTGATGGCATCAAG   <  3:20960/141‑1                                                              GAACAGCTGGCACAGGGCCTCGTCCTTGTCGCTG‑‑ATC‑AGCTCGAACGGGAAGCCTTGCTTGGCCTTGAAGTTCTCGTGCGACTTGATGCCTTCGCCGCGGCCAACACCGTGATATTCGGTGTGTCGCGTGATGGCATCAAG   >  4:20960/1‑141                                                                                                                                                                                                                AGGTGCTGCGGTCAACGCCCATGTACTCCTTGCCATACAGCTTCTTCAGCTTGATCACGTCGAACAGCTGGCACAGGGCCTCGTCCTTGTCGCTG‑‑ATC‑AGCTCGAACGGGAAGCCTTGCTTGGCCTTGAAGTTCTCGTGCGACTTGATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1413530‑1413680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccTTCGCCGCGGCCAACACCGTGATATTCGGTGTGTCGCGTGATGGCATCAAGT  <  NC_002947/1413722‑1413671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.