| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1572471 | 44 (0.820) | 4 (0.080) | 4/246 | NT | 8.3% | coding (593/1353 nt) | pcaB | 3‑carboxy‑cis,cis‑muconate cycloisomerase |
| ? | NC_002947 | = 1572538 | 47 (0.940) | coding (660/1353 nt) | pcaB | 3‑carboxy‑cis,cis‑muconate cycloisomerase | |||||
CCTTGGTGGGTCGTACCTGGTTGCAACACGCCACCCCGGTGACCCTGGGCATGAAACTGGCCGGTGTACTGGGTGCTTTGACCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTTCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1572318‑1572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgggcagGGTCAGCTTGAGCTGTTCGGCCAGCGCTTCGGCCACCGGCATCGCCTTGCTGCCCAGCGCCGCCAGGCTGCCCGAGGCACCGCCGAACTGCAGGACCAGAAGGCGCGGGCGCAGTTCCTGCAGGCGCTGACGGTGGCGGGTCAAA < NC_002947/1572538‑1572394 CCTTGGTGGGTCGTACCTGGTTGCAACACGCCACCCCGGTGACCCTGGGCATGAAACTGGCCGGTGTACTGGGTGCTTTGACCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTTCTGGTCCTGCAGTTCGGCGGTGCCTCG > 6:165333/1‑149 CTTGGTGGGTCGTACCTGGTTGCAACACGCCACCCCGGTGACCCTGGGCATGAAACTGGCCGGTGTACTGGGTGCTTTGACCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTTCTGGTCCTGCAGTTCGGCGGTGCCTCGG > 8:291460/1‑149 ACCCCGGTGACCCTGGGCATGAAACTGGCCGGTGTACTGGGTGCTTTGACCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTGCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGGGTCAGCTTGAGCTGTTCGGCCAGCGC > 7:77260/1‑149 TTGACCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTTCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGGGTCAGCTTGAGCTGTTCGGCCAGCGCTTCGGCCACCGGCATCGCCTTGCTGCCCAGCGCCGCCAGGCTGCC > 3:123450/1‑149 ACCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTTCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGGGTCAGCTTGAGCTGTTCGGCCAGCGCTTCGGCCACCGGCATCGCCTTGCTGCCCAGCGCCGCCAGGCTGCCCGA < 4:123450/149‑1 CCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTGCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAGGGTCAGCTTGAGCTGTTCGGCCAGCGCTTCGGCCACCGGCATCGCCTTGCTGCCCAGCGCCGCCAGGCTGCCCGAG < 8:77260/149‑1 CTCGGGCAGGGTCAGCTTGAGCTGTTCGGCCAGCGCTTCGGCCACCGGCATCGCCTTGCTGCCCAGCGCCGCCAGGCTGCCCGAGGCACCGCCGAACTGCAGGACCAGAAGGCGCGGGCGCAGTTCCTGCAGGCGCTGACGGTGGCGG < 7:167321/148‑1 GCAGGGTCAGCTTGAGCTGTTCGGCCAGCGCTTCGGCCACCGGCATCGCCTTGCTGCCCAGCGCCGCCAGGCTGCCCGAGGCACCGCCGAACTGCAGGACCAGAAGGCGCGGGCGCAGTTCCTGCAGGCGCTGACGGTGGCGGGTCAAA < 5:66657/149‑1 CCTTGGTGGGTCGTACCTGGTTGCAACACGCCACCCCGGTGACCCTGGGCATGAAACTGGCCGGTGTACTGGGTGCTTTGACCCGCCACCGTCAGCGCCTGCAGGAACTGCGCCCGCGCCTTCTGGTCCTGCAGTTCGGCGGTGCCTCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1572318‑1572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgggcagGGTCAGCTTGAGCTGTTCGGCCAGCGCTTCGGCCACCGGCATCGCCTTGCTGCCCAGCGCCGCCAGGCTGCCCGAGGCACCGCCGAACTGCAGGACCAGAAGGCGCGGGCGCAGTTCCTGCAGGCGCTGACGGTGGCGGGTCAAA < NC_002947/1572538‑1572394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |