| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2055590 = | 36 (0.670) | 3 (0.060) | 3/256 | NT | 7.8% | coding (731/1092 nt) | aroC | chorismate synthase |
| ? | NC_002947 | 2055630 = | 36 (0.690) | coding (771/1092 nt) | aroC | chorismate synthase | |||||
GATCGGCTGGCCCGACGAAATACCGCCCAGAATGCCGCCCGCGTTGTTGCTGAGGAAGCCTTCCGGGGTCAGTTCGTCCCGGTGCTCGGTGCCGCGCTGGGCCACACTGGCGAAACCGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2055714‑2055590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGAT > NC_002947/2055630‑2055774 GATCGGCTGGCCCGACGAAATACCGCCCAGAATGCCGCCCGCGTTGTTGCTGAGGAAGCCTTCCGGGGTCAGTTCGTCCCGGTGCTCGGTGCCGCGCTGGGCCACACTGGCGAAACCGGCGC > 1:120158/1‑122GATCGGCTGGCCCGACGAAATACCGCCCAGAATGCCGCCCGCGTTGTTGCTGAGGAAGCCTTCCGGGGTCAGTTCGTCCCGGTGCTCGGTGCCGCGCTGGGCCACACTGGCGAAACCGGCGC < 2:120158/122‑1 GTGCTCGGTGCCGCGCTGGGCCACACTGGCGAAACCGGCGCCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCG > 7:188928/1‑117 GTGCTCGGTGCCGCGCTGGGCCACACTGGCGAAACCGGCGCCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCG < 8:188928/117‑1 TCGGTGCCGCGCTGGGCCACACTGGCGAAACCGGCGCCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCCATCGTTGCCCACCTGGCACTGAAGCC > 6:56148/1‑148 CCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGAT < 1:321015/149‑1 GATCGGCTGGCCCGACGAAATACCGCCCAGAATGCCGCCCGCGTTGTTGCTGAGGAAGCCTTCCGGGGTCAGTTCGTCCCGGTGCTCGGTGCCGCGCTGGGCCACACTGGCGAAACCGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2055714‑2055590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGAT > NC_002947/2055630‑2055774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |