| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2055590 = | 36 (0.670) | 3 (0.060) | 3/256 | NT | 7.8% | coding (731/1092 nt) | aroC | chorismate synthase |
| ? | NC_002947 | 2055630 = | 36 (0.690) | coding (771/1092 nt) | aroC | chorismate synthase | |||||
CTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCC > NC_002947/2055442‑2055737 | cTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAAt < 3:113551/149‑1 (MQ=255) tGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGTAAATc > 8:65291/1‑149 (MQ=255) cgcCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATc < 7:162605/147‑1 (MQ=255) atcgatcgagcggcccggggtggtgatgctggaagtgggcttcagtgccaggtgggcaacgatcggctggcccgacgaaataccgcccagaatgccgcccgcgttgttgctgaggaagccttccggggtcagttcgtcccggtgcTCgg < 1:321015‑M1/4‑1 (MQ=255) cGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGgcgc > 8:149559/1‑149 (MQ=255) cGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGgcgc < 3:254879/149‑1 (MQ=255) aCCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGt > 1:24622/1‑149 (MQ=255) cAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGttt > 2:337949/1‑149 (MQ=255) aGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTc > 5:151111/1‑149 (MQ=255) gggCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAGACCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGtgtg > 1:84136/1‑149 (MQ=255) cgcCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGgcg > 1:139544/1‑128 (MQ=255) cgcCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGgcg < 2:139544/128‑1 (MQ=255) ggcttcagtgccaggtgggcaacgatgggctggcccgacgaaataccgcccagaatgccgcccgcgttgttgctgaggaagccttccggggtcagttcgtcccggtgcTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGa > 6:56148‑M1/109‑148 (MQ=255) tCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAAt < 2:300693/106‑1 (MQ=255) gCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCg > 8:99569/1‑149 (MQ=255) aaGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGAc < 7:149559/149‑1 (MQ=255) cGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAAc < 2:164252/149‑1 (MQ=255) cccGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCg < 8:213340/127‑1 (MQ=255) ccGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGAcc < 2:117200/146‑1 (MQ=255) ccGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCg < 2:84136/149‑1 (MQ=255) ccGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACAGAcc > 1:117200/1‑146 (MQ=255) ggCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGaa < 6:184676/149‑1 (MQ=255) gCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTc < 6:151111/149‑1 (MQ=255) aG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCTGTCAAGGGCGTGTAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTc < 1:224199/149‑1 (MQ=255) cgacgaaataccgcccagaatgccgcccgcgttgttgctgaggaagccttccggggtcagttcgtcccggtgcTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCAc > 7:188928‑M1/74‑117 (MQ=255) cgacgaaataccgcccagaatgccgcccgcgttgttgctgaggaagccttccggggtcagttcgtcccggtgcTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCAc < 8:188928‑M1/44‑1 (MQ=255) gATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGc > 8:88747/1‑148 (MQ=255) tCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGcaa < 1:337949/148‑1 (MQ=255) ttCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGcaacaa > 7:246296/1‑149 (MQ=255) cGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACgcggg > 3:86881/1‑149 (MQ=255) aTGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGATATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCAtt < 7:88747/149‑1 (MQ=255) tGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTc < 7:99569/149‑1 (MQ=255) agagCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTgg < 2:24622/149‑1 (MQ=255) cTGGCCCATGCGCTGATGAGCGTCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCATCAGCAACAACGCGGGCGGCATTCTGGGCgg > 6:121048/1‑149 (MQ=255) ccATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCATCAACGCGGCCGGCATTCTGGGCGGGAttt > 7:110335/1‑149 (MQ=255) ccATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGCCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTAttt > 7:114874/1‑149 (MQ=255) cATGCGCTGATGAGCATCAACGCGGTCAAGGTCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTtc < 8:246296/149‑1 (MQ=255) cATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTtc > 8:135130/1‑149 (MQ=255) aaCGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGt > 4:313054/1‑149 (MQ=255) cgcgGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTg < 7:135130/149‑1 (MQ=255) ggTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGcc > 4:241768/1‑148 (MQ=255) caatgtcGTGGAAATCGGCGCCGGTTTCGGCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCTGCTACATCGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCAc < 8:287630/142‑1 (MQ=255) aGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTg > 2:261991/1‑149 (MQ=255) gTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACt > 3:317789/1‑149 (MQ=255) ggAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTg > 2:321015/1‑148 (MQ=255) aaTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGc < 1:261991/149‑1 (MQ=255) aTCGGCGCCGGTTTCGCCAGTGTGTCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGcc < 7:65291/149‑1 (MQ=255) | CTGCGCCGAGACCAGGATTCGGTGGGCGCCAAGATCACCGTGGTCGCAGAAGGCGTGATGCCCGGGCTGGGCGAG‑CCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCC > NC_002947/2055442‑2055737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |