New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2055590 =	36 (0.670)	3 (0.060)	3/256	NT	7.8%	coding (731/1092 nt)	aroC	chorismate synthase
	?	NC_002947	2055630 =	36 (0.690)					coding (771/1092 nt)	aroC	chorismate synthase

GCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGAT  >  NC_002947/2055487‑2055774                                                                                                                                                |                                                                                                                                                 gCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCg                                                                                                                                             >  8:99569/1‑149 (MQ=255)     aaGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGAc                                                                                                                                         <  7:149559/149‑1 (MQ=255)         cGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAAc                                                                                                                                     <  2:164252/149‑1 (MQ=255)                 ccGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGAcc                                                                                                                                <  2:117200/146‑1 (MQ=255)                 ccGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCg                                                                                                                             <  2:84136/149‑1 (MQ=255)                 ccGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACAGAcc                                                                                                                                >  1:117200/1‑146 (MQ=255)                    ggCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGaa                                                                                                                          <  6:184676/149‑1 (MQ=255)                          gCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTc                                                                                                                    <  6:151111/149‑1 (MQ=255)                             aGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCTGTCAAGGGCGTGTAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTc                                                                                                                 <  1:224199/149‑1 (MQ=255)                               cgacgaaataccgcccagaatgccgcccgcgttgttgctgaggaagccttccggggtcagttcgtcccggtgcTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCAc                                                                                                                                               <  8:188928‑M1/44‑1 (MQ=255)                               cgacgaaataccgcccagaatgccgcccgcgttgttgctgaggaagccttccggggtcagttcgtcccggtgcTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCAc                                                                                                                                               >  7:188928‑M1/74‑117 (MQ=255)                                 gATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGc                                                                                                              >  8:88747/1‑148 (MQ=255)                                   tCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGcaa                                                                                                            <  1:337949/148‑1 (MQ=255)                                     ttCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGcaacaa                                                                                                         >  7:246296/1‑149 (MQ=255)                                           cGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACgcggg                                                                                                   >  3:86881/1‑149 (MQ=255)                                                  aTGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGATATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCAtt                                                                                            <  7:88747/149‑1 (MQ=255)                                                   tGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTc                                                                                           <  7:99569/149‑1 (MQ=255)                                                      agagCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTgg                                                                                        <  2:24622/149‑1 (MQ=255)                                                          cTGGCCCATGCGCTGATGAGCGTCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCATCAGCAACAACGCGGGCGGCATTCTGGGCgg                                                                                    >  6:121048/1‑149 (MQ=255)                                                               ccATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCATCAACGCGGCCGGCATTCTGGGCGGGAttt                                                                               >  7:110335/1‑149 (MQ=255)                                                               ccATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGCCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTAttt                                                                               >  7:114874/1‑149 (MQ=255)                                                                cATGCGCTGATGAGCATCAACGCGGTCAAGGTCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTtc                                                                              <  8:246296/149‑1 (MQ=255)                                                                cATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTtc                                                                              >  8:135130/1‑149 (MQ=255)                                                                                  aaCGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGt                                                            >  4:313054/1‑149 (MQ=255)                                                                                    cgcgGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTg                                                          <  7:135130/149‑1 (MQ=255)                                                                                       ggTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGcc                                                        >  4:241768/1‑148 (MQ=255)                                                                                          caatgtcGTGGAAATCGGCGCCGGTTTCGGCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCTGCTACATCGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCAc                                                     <  8:287630/142‑1 (MQ=255)                                                                                            aGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTg                                                  >  2:261991/1‑149 (MQ=255)                                                                                                 gTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACt                                             >  3:317789/1‑149 (MQ=255)                                                                                                   ggAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTg                                            >  2:321015/1‑148 (MQ=255)                                                                                                    gtgctcggtgccgcgctgggccacactggcgaaaccggcgccgaGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTtcgtcg                                                                          >  7:188928‑M2/45‑117 (MQ=255)                                                                                                    gtgctcggtgccgcgctgggccacactggcgaaaccggcgccgaGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTtcgtcg                                                                          <  8:188928‑M2/73‑1 (MQ=255)                                                                                                      aaTCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGc                                        <  1:261991/149‑1 (MQ=255)                                                                                                       aTCGGCGCCGGTTTCGCCAGTGTGTCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGcc                                       <  7:65291/149‑1 (MQ=255)                                                                                                        tcggtgccgcgctgggccacactggcgaaaccggcgccgaGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCCATCGTTGCCCACCTGGCACTGAAGcc                                       >  6:56148‑M2/41‑148 (MQ=255)                                                                                                           GCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATc                                                              <  2:120158‑M1/122‑1 (MQ=255)                                                                                                           GCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATc                                                              >  1:120158‑M1/1‑122 (MQ=255)                                                                                                                 gTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCTTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGc                             <  5:121048/149‑1 (MQ=255)                                                                                                                 gTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCa                                                                     >  8:191523/1‑109 (MQ=255)                                                                                                                     cGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATc                          <  3:313054/148‑1 (MQ=255)                                                                                                                      gCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATcac                        >  1:302496/1‑149 (MQ=255)                                                                                                                                 ccAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGcc             >  5:85646/1‑149 (MQ=255)                                                                                                                                    gcgcGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCt          <  4:317789/149‑1 (MQ=255)                                                                                                                                          cACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCTATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGc                             <  7:51527/124‑1 (MQ=255)                                                                                                                                          cACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCAACATCCAGc                             >  8:51527/1‑124 (MQ=255)                                                                                                                                            ccgaGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTcgatcgat  <  1:321015‑M2/145‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 GCAGAAGGCGTGATGCCCGGGCTGGGCGAGCCGATCTTCGACCGCCTGGATGCAGAGCTGGCCCATGCGCTGATGAGCATCAACGCGGTCAAGGGCGTGGAAATCGGCGCCGGTTTCGCCAGTGTGGCCCAGCGCGGCACCGAGCACCGGGACGAACTGACCCCGGAAGGCTTCCTCAGCAACAACGCGGGCGGCATTCTGGGCGGTATTTCGTCGGGCCAGCCGATCGTTGCCCACCTGGCACTGAAGCCCACTTCCAGCATCACCACCCCGGGCCGCTCGATCGAT  >  NC_002947/2055487‑2055774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.