New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2129966 =	68 (1.260)	4 (0.080)	4/248	NT	6.0%	coding (2233/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130009 =	62 (1.230)					coding (2190/2496 nt)	fimD	type I pili subunit FimD

GGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130012‑2129966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCCC  >  NC_002947/2130009‑2130156                                                                                                                                                                                                     GGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTG                                                 >  8:248269/1‑148        CCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAG                                                           >  3:72000/1‑131        CCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAG                                                           <  4:72000/131‑1         CTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGC                                        <  7:248269/149‑1                                         GAGGCACTACCTGGGCGATGCCGTTGTCGAATTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTG         >  1:262297/1‑148                                              ACTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCC   <  3:55296/149‑1                                               CTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCCC  >  6:45842/1‑149                                               CTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCC   >  4:108942/1‑148                                                                                                                                                                                                     GGTAGTGCCTCGCCAGGGTGCAGTGGTCAAGCACCGCTTCGAGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130012‑2129966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggcacTACCTGGGCGATGCCGTTGTCGATTTCCACATCAGGATCGAGACGGTCGGTTTCCAGGACCACCGAATTGGTCCGGTACGGTTGCAGGTAGGGCAAAAGTGCATAACCGCGTGAATTGGTGCGCGTACCCGTTGCGTTTTGCAGGCCC  >  NC_002947/2130009‑2130156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.