New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 240940362 (1.150)4 (0.080) 3/246 NT 6.4% coding (2045/2742 nt) acnA‑I aconitate hydratase
?NC_002947 = 2409462 59 (1.180)coding (1986/2742 nt) acnA‑I aconitate hydratase

ACTTCGTGGTTGCCACGCCGCGAACCGTAGGAGTTGAAGTCGCGTGGCTCCACACCTTGTTCCCGCAGGTAGCGCCCGGCCGGGCTGTCGGTCTTGATGTTGCCGGCGGGGGAAATGTGGTCGGTGGTCACTGAATCGCCCAGCAGCGCCAGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2409247‑2409403
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcacccACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGGCGCTGCTGGGCGATTCAGTGACCACCGACCACATTTCCCCCGCCGGCAACATCAAGACCGACAGCCCGGCCGGGC  <  NC_002947/2409462‑2409320
                                                                                                                                                                                                                                                                                                            
ACTTCGTGGTTGCCACGCCGCGAACCGTAGGAGGTGAAGTCGCGTGGCTCCACACCTTGTTCCCGCAGGTAGCGCCCGGCCGGGCTGTCGGTCTTGATGTTGCCGGCGGGGGAAATGTGGTCGGTGGTCACTGAATCGCCCAGCAGCGC                                                                                                                                                         <  6:290593/149‑1
                                                   ACACCTTGTTCCCGCAGGTAGCGCCCGGCCGGGCTGTCGGTCTTGATGTTGCCGGCGGGGGAAATGTGGTCGGTGGTCACTGAATCGCCCAGCAGCGCCAGCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGC                                                                                                       >  7:299250/1‑148
                                                               CGCAGGTAGCGCCCGGCCGGGCTGTCGGTCTTGATGTTGCCGGCGGGGGAAATGTGGTCGGTGGTCACTGAATCGCCCAGCAGCGCCAGCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGC                                                                                          >  5:29351/1‑149
                                                                            CGGCCGGGCTGTCGGTCTTGATGTTGCCGGCGGGGGAAATGTGGTCGGTGGTCACTGAATCGCCCAGCAGCGCCAGCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGG                                                                             <  6:29351/149‑1
                                                                            CGGCCGGGCTGTCGGTCTTGATGTTGCCGGCGGGGGAAATGTGGTCGGTGGTCACTGAATCGCCCAGCAGCGCCAGCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGG                                                                             <  8:299250/149‑1
                                                                                                                                                     CAGCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGGCGCTGCTGGGCGATTCAGTGACCACCGACCACATTTCCCCCGCCGGCAACATCAAGACCGACAGCCCGGCCGG    <  1:224649/149‑1
                                                                                                                                                     CAGCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGGCGCTGCTGGGCGATTCAGT                                                          <  1:156442/95‑1
                                                                                                                                                     CAGCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGGCGCTGCTGGGCGATTCAGT                                                          >  2:156442/1‑95
                                                                                                                                                       GCACCCACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGGCGCTGCTGGGCGATTCAGTGACCACCGACCACATTTCCCCCGCCGGCAACATCAAGACCGACAGCCCGGCCGGGC  <  6:207514/149‑1
                                                                                                                                                                                                                                                                                                            
ACTTCGTGGTTGCCACGCCGCGAACCGTAGGAGTTGAAGTCGCGTGGCTCCACACCTTGTTCCCGCAGGTAGCGCCCGGCCGGGCTGTCGGTCTTGATGTTGCCGGCGGGGGAAATGTGGTCGGTGGTCACTGAATCGCCCAGCAGCGCCAGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2409247‑2409403
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcacccACCGTTCTTCGACGGCATCGGCGGGCCGCCGCCACAAATTGCCAATATTCACGGCGCACGGGTGCTGGCGCTGCTGGGCGATTCAGTGACCACCGACCACATTTCCCCCGCCGGCAACATCAAGACCGACAGCCCGGCCGGGC  <  NC_002947/2409462‑2409320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.