New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2646981 =	46 (0.850)	3 (0.060)	3/246	NT	6.8%	coding (333/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	2647029 =	39 (0.780)					coding (285/2499 nt)	PP_2316	ABC transporter permease

GGCGCCGATCTGGTACTGCAGGGCAGCGCGCCGGCCCGCGAGCAACAGCTCGATGCCGGCAAGGCACTGGGCTTGCGCCATGCACGCGTGGTCGAGTTCACCAGCGTGGTCGGCGGCGACAATGGCATCCAGCTGTCCAGCGTAAAGGCCGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2647136‑2646981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgacCACGCTGGTGAACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTT  >  NC_002947/2647029‑2647173                                                                                                                                                                                                                                                                                                               GGCGCCGATCTGGTACTGCAGGGCAGCGCGCCGGCCCGCGAGCAACAGCTCGATGCCGGCAAGGCACTGGGCTTGCGCCATGCACGCGTGGTCGAGTTCACCAGCGTGGTCGGCGGCGCCAATGGCATCCAGCTGTCCAGCGTAAAGGC                                                                                                                                                          >  7:279276/1‑149      CGATCTGGTACTGCAGGGCAGCGCGCCGGCCCGCGAGCAACAGCTCGATGCCGGCAAGGCACTGGGCTTGCGCCATGCACGCGTGGTCGAGTTCACCAGCGTGGTCGGCGGCGACAATGGCATCCAGCTGTCCAGCGTAAAGGCCGCCG                                                                                                                                                     >  4:186580/1‑149                                                                                                          GTGGTCGGCGGCGACAATGGCATCCGGCTGTCCAGCGTAAAGGCCGCCGACCACGCTGGTGAACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAC                                                   >  3:140631/1‑147                                                                                                             GTCGGCGGCGACAATGGCATCCGGCTGTCCAGCGTAAAGGCCGCCGACCACGCTGGTGAACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGAT                                              <  4:140631/149‑1                                                                                                               CGGCGGCGACAATGGCATCCAGCTGTCCAGCGTAAAGGCCGCCGACCACGCTGGTGAACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAC                                                   >  1:156808/1‑142                                                                                                                                                    GCCGCCGACCACGCTGGTGAACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGC       <  2:50423/149‑1                                                                                                                                                         CGACCACGCTGGTGAACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTT  <  6:149672/149‑1                                                                                                                                                                                                                                                                                                               GGCGCCGATCTGGTACTGCAGGGCAGCGCGCCGGCCCGCGAGCAACAGCTCGATGCCGGCAAGGCACTGGGCTTGCGCCATGCACGCGTGGTCGAGTTCACCAGCGTGGTCGGCGGCGACAATGGCATCCAGCTGTCCAGCGTAAAGGCCGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2647136‑2646981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgacCACGCTGGTGAACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTT  >  NC_002947/2647029‑2647173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.