New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2646981 =	46 (0.850)	3 (0.060)	3/246	NT	6.8%	coding (333/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	2647029 =	39 (0.780)					coding (285/2499 nt)	PP_2316	ABC transporter permease

CGATGCTGTCGCCGATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAC  >  NC_002947/2646836‑2647124                                                                                                                                                  |                                                                                                                                                 aaacggcgccatgcagctgcgcgccagcgagtttctgggcgccgatctggtactgcagggcagcgcgccggcccgcgagcaacagctcgatgccggcaaggcactgggcttgcgccatgcacgcgtggtcgagttcaccagcgtgGTcg                                                                                                                                               <  6:149672‑M1/4‑1 (MQ=255)  gATGCTGTCGCCGATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTcgg                                                                                                                                              <  5:39464/149‑1 (MQ=255)   aTGCTGTCGCCGATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTcggc                                                                                                                                             <  6:170777/149‑1 (MQ=255)    tGCTGTCGCCGATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTcggcg                                                                                                                                            <  7:195848/149‑1 (MQ=255)     gCTGTCGCCGATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATGAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTcggcgg                                                                                                                                           >  3:93769/1‑149 (MQ=255)      gcgccatgcagctgcgcgccagcgagtttctgggcgccgatctggtactgcagggcagcgcgccggcccgcgagcaacagctcgatgccggcaaggcactgggcttgcgccatgcacgcgtggtcgagttcaccagcgtgGTCggcggc                                                                                                                                          <  2:50423‑M1/9‑1 (MQ=255)      cTGTCGCCGATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTcggcgg                                                                                                                                           <  5:274529/148‑1 (MQ=255)              gATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGACCGCCGCCGGGTGGTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGc                                                                                                                                  <  8:115830/149‑1 (MQ=255)                  gCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGa                                                                                                                              >  5:104574/1‑149 (MQ=255)                   ccAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGa                                                                                                                              >  8:188880/1‑148 (MQ=255)                   ccAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGa                                                                                                                              >  2:10291/1‑148 (MQ=255)                   ccAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGa                                                                                                                              >  2:96511/1‑148 (MQ=255)                   ccAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGAc                                                                                                                             >  7:256583/1‑149 (MQ=255)                    cAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGa                                                                                                                              >  5:149672/1‑147 (MQ=255)                    cAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACa                                                                                                                            >  8:279276/1‑149 (MQ=255)                     aGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAg                                                                                                                           >  3:327835/1‑149 (MQ=255)                         ccAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTgg                                                                                                                       <  6:315115/149‑1 (MQ=255)                          cAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGa                                                                                                                      <  7:266485/149‑1 (MQ=255)                               ccgccAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCa                                                                                                                 >  5:171308/1‑149 (MQ=255)                                       aGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTcgcc                                                                                                         >  3:66493/1‑149 (MQ=255)                                             atctggtactgcagggcagcgcgccggcccgcgagcaacagctcgatgccggcaaggcactgggcttgcgccatgcacgcgtggtcgagttcaccagcgtgGTCGGCGGCCTTTACGCTGGACAGCCGGATGCCATTGTCGCCGCCGAc                                                                                                   <  4:140631‑M1/48‑1 (MQ=255)                                              gTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGAcc                                                                                                  <  4:66493/149‑1 (MQ=255)                                                  gtactgcagggcagcgcgccggcccgcgagcaacagctcgatgccggcaaggcactgggcttgcgccatgcacgcgtggtcgagttcaccagcgtgGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGccgccg                                                                                                     >  1:156808‑M1/97‑142 (MQ=255)                                                  gtactgcagggcagcgcgccggcccgcgagcaacagctcgatgccggcaaggcactgggcttgcgccatgcacgcgtggtcgagttcaccagcgtgGTCGGCGGCCTTTACGCTGGACAGCCGGATGCCATTGTCGCCGCCGACCAc                                                                                                >  3:140631‑M1/97‑147 (MQ=255)                                                   aCCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCt                                                                                             >  2:112686/1‑149 (MQ=255)                                                      cacaCTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGt                                                                                          <  6:171308/149‑1 (MQ=255)                                                       acacTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGt                                                                                          >  2:212874/1‑148 (MQ=255)                                                           ttCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACt                                                                                    >  3:118012/1‑149 (MQ=255)                                                             cGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTc                                                                                   <  1:67819/148‑1 (MQ=255)                                                               ccAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGAc                                                                                <  2:188937/149‑1 (MQ=255)                                                                cAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGAcc                                                                               >  4:197823/1‑149 (MQ=255)                                                                  ggggCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCTGCCGACCACGCTGGTGA‑ACTCGACCAc                                                                             <  1:10291/149‑1 (MQ=255)                                                                    ggCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCAcgc                                                                           <  3:197823/149‑1 (MQ=255)                                                                    ggCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCAcgc                                                                           <  5:291371/149‑1 (MQ=255)                                                                       aGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTg                                                                        >  3:237585/1‑149 (MQ=255)                                                                         ggCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGACCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCa                                                                      >  6:189628/1‑149 (MQ=255)                                                                                     gtgtTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGccc                                                          <  7:188880/149‑1 (MQ=255)                                                                                      tgtTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGcc                                                           >  3:144308/1‑147 (MQ=255)                                                                                      tgtTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCa                                                         <  6:104574/149‑1 (MQ=255)                                                                                          tcttcGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGACACTCGACCACGCGTGCATGGCGCAAGCCCAGt                                                       <  1:212874/148‑1 (MQ=255)                                                                                                 cATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCg                                              >  3:200525/1‑149 (MQ=255)                                                                                                        tGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGa                                       <  4:327835/149‑1 (MQ=255)                                                                                                            ggAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTg                                   >  5:272342/1‑149 (MQ=255)                                                                                                             gAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGcaac                                  <  2:87262/149‑4 (MQ=255)                                                                                                                  cTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCa                                                                                                                 <  3:173615/66‑1 (MQ=255)                                                                                                                  cTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCa                                                                                                                 >  4:173615/1‑66 (MQ=255)                                                                                                                       tACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCggg                        >  3:186580/1‑149 (MQ=255)                                                                                                                          ttGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCg                     >  5:291832/1‑149 (MQ=255)                                                                                                                                        ggTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTg        <  5:189628/148‑1 (MQ=255)                                                                                                                                         gTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCa      <  4:118012/149‑1 (MQ=255)                                                                                                                                         gTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACACGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCa      <  4:93769/149‑1 (MQ=255)                                                                                                                                            ggCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGt    <  8:256583/148‑1 (MQ=255)                                                                                                                                                 cGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGgc                   >  1:206842/1‑128 (MQ=255)                                                                                                                                                 cGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGgc                   <  2:206842/128‑1 (MQ=255)                                                                                                                                                 cGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAc  >  6:344111/1‑145 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CGATGCTGTCGCCGATCGCCAGCCCCAGTGCCGCCAACAGGCGTGGTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAC  >  NC_002947/2646836‑2647124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.