New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2646981 =	46 (0.850)	3 (0.060)	3/246	NT	6.8%	coding (333/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	2647029 =	39 (0.780)					coding (285/2499 nt)	PP_2316	ABC transporter permease

GTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGC  >  NC_002947/2646881‑2647177                                                                                                                                                     |                                                                                                                                                      gTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGAcc                                                                                                                                                       <  4:66493/149‑1 (MQ=255)     gtactgcagggcagcgcgccggcccgcgagcaacagctcgatgccggcaaggcactgggcttgcgccatgcacgcgtggtcgagttcaccagcgtgGTCGGCGGCCTTTACGCTGGACAGCCGGATGCCATTGTCGCCGCCGACCAc                                                                                                                                                     >  3:140631‑M1/97‑147 (MQ=255)      aCCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCt                                                                                                                                                  >  2:112686/1‑149 (MQ=255)         cacaCTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGt                                                                                                                                               <  6:171308/149‑1 (MQ=255)          acacTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGt                                                                                                                                               >  2:212874/1‑148 (MQ=255)              ttCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACt                                                                                                                                         >  3:118012/1‑149 (MQ=255)                cGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTc                                                                                                                                        <  1:67819/148‑1 (MQ=255)                  ccAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGAc                                                                                                                                     <  2:188937/149‑1 (MQ=255)                   cAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGAcc                                                                                                                                    >  4:197823/1‑149 (MQ=255)                     ggggCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCTGCCGACCACGCTGGTGA‑ACTCGACCAc                                                                                                                                  <  1:10291/149‑1 (MQ=255)                       ggCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCAcgc                                                                                                                                <  5:291371/149‑1 (MQ=255)                       ggCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCAcgc                                                                                                                                <  3:197823/149‑1 (MQ=255)                          aGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTg                                                                                                                             >  3:237585/1‑149 (MQ=255)                            ggCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGACCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCa                                                                                                                           >  6:189628/1‑149 (MQ=255)                                        gtgtTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGccc                                                                                                               <  7:188880/149‑1 (MQ=255)                                         tgtTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGcc                                                                                                                >  3:144308/1‑147 (MQ=255)                                         tgtTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCa                                                                                                              <  6:104574/149‑1 (MQ=255)                                             tcttcGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGACACTCGACCACGCGTGCATGGCGCAAGCCCAGt                                                                                                            <  1:212874/148‑1 (MQ=255)                                                    cATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCg                                                                                                   >  3:200525/1‑149 (MQ=255)                                                           tGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGa                                                                                            <  4:327835/149‑1 (MQ=255)                                                               ggAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTg                                                                                        >  5:272342/1‑149 (MQ=255)                                                                gAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGcaac                                                                                       <  2:87262/149‑4 (MQ=255)                                                                          tACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCggg                                                                             >  3:186580/1‑149 (MQ=255)                                                                             ttGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCg                                                                          >  5:291832/1‑149 (MQ=255)                                                                                           ggTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTg                                                             <  5:189628/148‑1 (MQ=255)                                                                                            gTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCa                                                           <  4:118012/149‑1 (MQ=255)                                                                                            gTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACACGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCa                                                           <  4:93769/149‑1 (MQ=255)                                                                                               ggCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGt                                                         <  8:256583/148‑1 (MQ=255)                                                                                                  gtggtcggcggcgacaatggcatccggctgtccagcgtaaaggccgccgacCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAc                                                       >  3:140631‑M2/52‑147 (MQ=255)                                                                                                    cGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGgc                                                                        >  1:206842/1‑128 (MQ=255)                                                                                                    cGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGgc                                                                        <  2:206842/128‑1 (MQ=255)                                                                                                    cGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAc                                                       >  6:344111/1‑145 (MQ=255)                                                                                                     gtcggcggcgacaatggcatccggctgtccagcgtaaaggccgccgacCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGAt                                                  <  4:140631‑M2/101‑1 (MQ=255)                                                                                                       cggcggcgacaatggcatccagctgtccagcgtaaaggccgccgacCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTAc                                                       >  1:156808‑M2/47‑142 (MQ=255)                                                                                                       CGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCg                                                >  4:186580‑M1/1‑149 (MQ=255)                                                                                                            GCCTTTACGCTGGACAGCTGGATGCCATTGGCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGcc                                           >  7:279276‑M1/1‑149 (MQ=255)                                                                                                              cTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGcc                                           >  4:140443/1‑147 (MQ=255)                                                                                                                           aGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGc                                                                 <  6:277973/112‑1 (MQ=255)                                                                                                                           aGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGc                                                                 <  4:60155/112‑1 (MQ=255)                                                                                                                           aGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGgc                            >  7:82114/1‑149 (MQ=255)                                                                                                                              tGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGgcgcg                         >  6:144986/1‑149 (MQ=255)                                                                                                                                gATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCg                                 >  2:127849/1‑139 (MQ=255)                                                                                                                                gATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCg                                 <  1:127849/139‑1 (MQ=255)                                                                                                                                     cATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTg                   >  8:133557/1‑148 (MQ=255)                                                                                                                                     cATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTg                   >  1:50423/1‑148 (MQ=255)                                                                                                                                      aTTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCa                 >  4:220165/1‑149 (MQ=255)                                                                                                                                       ttGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCAt                <  1:112686/149‑1 (MQ=255)                                                                                                                                       ttGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCAt                <  4:200525/149‑1 (MQ=255)                                                                                                                                          tCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGgc             <  4:144308/149‑1 (MQ=255)                                                                                                                                            gccgccgacCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGgcgc           <  2:50423‑M2/140‑1 (MQ=255)                                                                                                                                                 cgacCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGttt      <  6:149672‑M2/145‑1 (MQ=255)                                                                                                                                                     cACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAggc  >  7:192669/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GTTCGACCCACACTTCGCCAGGGGCAGGGCCGCCGCCGGGTGTTTCTTCGGCATAAGGTGCCGGAGCGCTGCGTACTTGCCCGCGCAATGGGTAGGCGCCGTCGGCGGCCTTTACGCTGGACAGCTGGATGCCATTGTCGCCGCCGACCACGCTGGTGA‑ACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGC  >  NC_002947/2646881‑2647177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.