| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2884263 | 36 (0.670) | 3 (0.060) | 3/250 | NT | 7.1% | coding (823/927 nt) | PP_2539 | LysR family transcriptional regulator |
| ? | NC_002947 | = 2884322 | 45 (0.880) | coding (882/927 nt) | PP_2539 | LysR family transcriptional regulator | |||||
ACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2884133‑2884263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccgcAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGCCAGCGACACCAGCAACCCGCGCTGCTCGGCAAAGGCCGCCACCGCACGGGGAATGACTGCCACCAACGTCGGGTCATC < NC_002947/2884322‑2884176 ACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGC > 7:52433/1‑128ACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGC < 8:52433/128‑1 ACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCACGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATG > 5:150344/1‑149 ACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCA < 7:148376/149‑1 GACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGC < 6:150344/149‑1 GTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGCCAGCGACACCAGCAACCCGCGCTGCTCGGCAAAGGCCGCCACCGCACGGGGAATGACTGCCACCAACGTCGGG < 3:3053/149‑1 GTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGCCAGCGACACCAGCAACCCGCGCTGCTCGGCAAAGGCCGCCACCGCACGGGGAATGACTGCCACCAACGTCGG < 2:179546/148‑1 GTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGCCAGCGACACCAGCAACCCGCGCTGCTCGGCAAAGGCCGCCACCGCACGGGGAATGACTGCCACCAACGTCGG < 5:135195/148‑1 GCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGCCAGCGACACCAGCAACCCGCGCTGCTCGGCAAAGGCCGCCACCGCACGGGGAATGACTGCCACCAACGTCGGGTCATC < 5:347321/149‑1 ACTGGAGACCTTTTCCACCTTCGCCACCTTCATGCTGCTTGAAGATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2884133‑2884263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccgcAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGCCAGCGACACCAGCAACCCGCGCTGCTCGGCAAAGGCCGCCACCGCACGGGGAATGACTGCCACCAACGTCGGGTCATC < NC_002947/2884322‑2884176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |