New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2884263	36 (0.670)	3 (0.060)	3/250	NT	7.1%	coding (823/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	= 2884322	45 (0.880)					coding (882/927 nt)	PP_2539	LysR family transcriptional regulator

GATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTGGCCCTGTCCCGTCCT  >  NC_002947/2884176‑2884470                                                                                                                                                   |                                                                                                                                                     gATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTgc                                                                                                                                                    <  5:347321‑M2/149‑3 (MQ=255)      cccGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTgcggcac                                                                                                                                               <  3:3053‑M2/149‑8 (MQ=255)       ccGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTgcggcac                                                                                                                                               <  5:135195‑M2/148‑8 (MQ=255)       ccGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTgcggcac                                                                                                                                               <  2:179546‑M2/148‑8 (MQ=255)                   gCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCtggtgg                                                                                                                                   <  1:179546/148‑1 (MQ=255)                     aGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGTTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTggagg                                                                                                                                <  2:185577/149‑1 (MQ=255)                          ttCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTggag                                                                                                                                 >  8:20572/1‑143 (MQ=255)                          ttCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTggag                                                                                                                                 <  7:20572/143‑1 (MQ=255)                             cccGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGAcg                                                                                                                        >  6:7893/1‑149 (MQ=255)                               cGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGAcggc                                                                                                                      >  2:22549/1‑149 (MQ=255)                                 tGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGAcggcgg                                                                                                                    >  8:71717/1‑149 (MQ=255)                                   cGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGt                                                                                                                  <  1:111480/149‑1 (MQ=255)                                      tGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGaa                                                                                                               <  1:22549/149‑1 (MQ=255)                                        gcggcCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAgt                                                                                                             <  7:185962/149‑1 (MQ=255)                                            ccTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGa                                                                                                         <  4:179869/149‑1 (MQ=255)                                             cTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGaa                                                                                                               <  3:27861/142‑1 (MQ=255)                                             cTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGaa                                                                                                               >  4:27861/1‑142 (MQ=255)                                             cTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGAc                                                                                                        >  1:136051/1‑149 (MQ=255)                                                      gcagcGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCAt                                                                                               <  8:127046/149‑1 (MQ=255)                                                       cagcGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCAtt                                                                                              <  6:347321/149‑1 (MQ=255)                                                                  gCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTc                                                                                   >  1:153640/1‑149 (MQ=255)                                                                    tGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCg                                                                                 >  5:120255/1‑149 (MQ=255)                                                                       tgtCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTg                                                                              >  5:338771/1‑149 (MQ=255)                                                                               gCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTgcggcaccgccagcgacaccagcaacccgcgctgctcggcaaaggccgccaccgcacggggaatgactgccaccaacgtc                                                                      <  6:150344‑M2/149‑81 (MQ=255)                                                                                   tGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTgcggcaccgccagcgacaccagcaacccgcgctgctcggcaaaggccgccaccgcacggggaatgactgccaccaacgtcgggt                                                                  <  7:148376‑M2/149‑85 (MQ=255)                                                                                    gCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTgg                                                                  >  8:197809/1‑148 (MQ=255)                                                                                     ccGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCa                                                                <  6:338771/149‑1 (MQ=255)                                                                                      cGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCtgg                                                                                                                                      <  3:97831/78‑1 (MQ=255)                                                                                      cGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCtgg                                                                                                                                      >  4:97831/1‑78 (MQ=255)                                                                                      cGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAg                                                               >  8:207006/1‑149 (MQ=255)                                                                                        cTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAggg                                                             <  6:135195/149‑1 (MQ=255)                                                                                        cTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCACCATTGCTTTCCAGTACGTTGCCGAAGCGCTGGCAgg                                                              >  8:261336/1‑148 (MQ=255)                                                                                           cGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATa                                                          <  7:71717/149‑1 (MQ=255)                                                                                            gggCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATaa                                                         <  5:7893/149‑1 (MQ=255)                                                                                                    agcgagcCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAgcggcg                                                   <  7:103082/147‑1 (MQ=255)                                                                                                        agcCGTTCGGCAGCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATc                                             <  7:62760/149‑1 (MQ=255)                                                                                                         gcCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCg                                            <  7:207006/149‑1 (MQ=255)                                                                                                          ccGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGaa                                                                                                               >  8:198921/1‑81 (MQ=255)                                                                                                          ccGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGaa                                                                                                               <  7:198921/81‑1 (MQ=255)                                                                                                            gTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGACCTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCg                                            >  5:202249/1‑146 (MQ=255)                                                                                                            gTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCg                                            <  6:202249/146‑1 (MQ=255)                                                                                                               cGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGa                                       <  6:120255/148‑1 (MQ=255)                                                                                                                  cATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTgcggcaccgccagcgacaccagcaacccgcgctgctcggcaaaggccgccaccgcacgtggaatgactgccaccaacgtcgggtcatcttcaagcagcatgaaggtggcgaaggt                                   >  5:150344‑M2/1‑34 (MQ=255)                                                                                                                          aCCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTc                           >  3:5039/1‑149 (MQ=255)                                                                                                                           ccGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCa                          >  2:287360/1‑149 (MQ=255)                                                                                                                            cGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCAt                         >  3:271907/1‑149 (MQ=255)                                                                                                                               gTCGCGGCGCCGTTATCGCCTGCGGTACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTAt                      >  8:193746/1‑149 (MQ=255)                                                                                                                                    ggcgCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTg                 <  4:3053/149‑1 (MQ=255)                                                                                                                                       gcCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATc                     <  1:8410/142‑1 (MQ=255)                                                                                                                                       gcCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATc                     >  2:8410/1‑142 (MQ=255)                                                                                                                                       gcCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTGGcc              >  4:302874/1‑149 (MQ=255)                                                                                                                                              tCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTGGCCCTGTccc       <  3:302874/149‑1 (MQ=255)                                                                                                                                              ccGCCAGCGACACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTGGCCCTGTccc       <  7:311043/148‑1 (MQ=255)                                                                                                                                                   tGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTTTCGGTGGATCAGTTCTTTTCATTATCGGTg                 >  4:101326/1‑134 (MQ=255)                                                                                                                                                   tGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTg                 <  3:101326/134‑1 (MQ=255)                                                                                                                                                   tGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTGGCCCTGTCCCGTCct  >  2:68784/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GATGACCCGACGTTGGTGGCAGTCATTCCCCGTGCGGTGGCGGCCTTTGCCGAGCAGCGCGGGTTGCTGGTGTCGCTGGCGGTGCCGCTCCGGGCGCTGAGCGAGCCGTTCGGCATCGTGCACCGGGTCGCGGCGCCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTGGCAGGGATAAGCGGCGGTTATCGGTGGATCAGTTCTTTTCATTATCGGTGGCCCTGTCCCGTCCT  >  NC_002947/2884176‑2884470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.