| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2991498 | 50 (0.930) | 5 (0.100) | 3/252 | NT | 9.6% | intergenic (‑19/+56) | vgrG‑I/hcpC‑I | type VI secretion system protein/hemolysin‑coregulated protein |
| ? | NC_002947 | = 2991558 | 46 (0.900) | coding (512/516 nt) | hcpC‑I | hemolysin‑coregulated protein | |||||
AAGCTGATCAGTTTCAGCTCCAGTTCAAAGGGTGCGCTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2991349‑2991498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgCCTGACCTGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGCATTCGAAGTGGT < NC_002947/2991558‑2991412 AAGCTGATCAGTTTCAGCTCCAGTTCAAAGGGTGCGCTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCC < 5:108166/149‑1 ATCAGTTTCAGCTCCAGTTCAAAGGGTGCGCTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTC < 5:262290/139‑1 ATCAGTTTCAGCTCCAGTTCAAAGGGTGCGCTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTC > 6:262290/1‑139 TCAGCTCCAGTTCAAAGGGTGCGCTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGCCTGACCTGTG > 7:18222/1‑148 CACTTCGAATTCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGC < 3:249955/149‑1 CACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGCCTGACCTGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGC < 8:18222/149‑1 ACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGCCTGACCTGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCG < 7:296455/149‑1 GAATTCAGCTTTGCCATCCGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACA < 1:287499/149‑1 CCGCCGCCTGACCTGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGCATTCGAAG > 2:26720/1‑149 GCCGCCTGACCTGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGCATTCGAAGTG > 8:138854/1‑149 CGCCTGACCTTTGGAAATGCCCCGGGGAGGCCATGCCCGCCCGGGCTTTGTGTTTATTCAGACGGAGGACATGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTTAGGCACTCGTTTGGAAAGCTGCATTCGATGTGGT < 4:267149/149‑1 AAGCTGATCAGTTTCAGCTCCAGTTCAAAGGGTGCGCTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCA‑ACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2991349‑2991498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccgCCTGACCTGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGCTTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGCATTCGAAGTGGT < NC_002947/2991558‑2991412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |