| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2991498 | 50 (0.930) | 5 (0.100) | 3/252 | NT | 9.6% | intergenic (‑19/+56) | vgrG‑I/hcpC‑I | type VI secretion system protein/hemolysin‑coregulated protein |
| ? | NC_002947 | = 2991558 | 46 (0.900) | coding (512/516 nt) | hcpC‑I | hemolysin‑coregulated protein | |||||
ACCACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTGGGGAAGCACGGTATTGAT > NC_002947/2991412‑2991703 | accacATCGAATGCAGCTTTCCAAACGAGTGCCTAAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCATGTCCTCCGTCTGAATAAACACAAAGCCCGGGCGGGCATGGCCTC‑CCCGGGGCATTTCCAAAGGTCAGGcg < 4:267149‑M2/149‑3 (MQ=255) cacTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGcggc > 8:138854‑M2/1‑145 (MQ=255) cTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGcggcgg > 2:26720‑M2/1‑143 (MQ=255) tCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCACGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACCGGTCAGGCGGCGGGt > 3:240324/1‑149 (MQ=17) aGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCa < 1:12428/149‑1 (MQ=32) aGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCa < 3:154284/149‑1 (MQ=32) tGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAgtc < 2:308803/147‑1 (MQ=32) gTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCtt < 2:61688/149‑1 (MQ=32) cTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGgt > 3:305263/1‑149 (MQ=32) cTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCt < 6:246228/149‑1 (MQ=34) gcAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGgtgt > 4:281738/1‑137 (MQ=33) gcAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGgtgt < 3:281738/137‑1 (MQ=33) aaTCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAg > 7:91813/1‑149 (MQ=34) tCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGGCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGcc < 5:203199/149‑1 (MQ=21) cATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCATGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTc > 6:4946/1‑148 (MQ=21) aTAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTgg < 1:281437/120‑1 (MQ=35) aTAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTgg > 2:281437/1‑120 (MQ=35) aTAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGa < 8:91813/149‑1 (MQ=34) tAAAAGATCCTTGTCCGCCGTCTGGATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGa > 2:74070/1‑148 (MQ=21) tAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCTGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTc < 2:254091/146‑1 (MQ=21) tAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTc > 1:258447/1‑146 (MQ=34) tAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTc > 1:254091/1‑146 (MQ=34) tAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTc < 2:258447/146‑1 (MQ=34) tAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGAt < 4:305263/149‑1 (MQ=34) aaGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACg > 4:291984/1‑149 (MQ=34) ttGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGa > 3:274627/1‑149 (MQ=34) tGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACGGGTCAGGcggcggacaaggatcttttatgcctagccaatctgatttgcgctacagctttgaggcactcggatggcaaagctgaattc < 1:287499‑M2/149‑81 (MQ=255) gTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGa < 5:4946/147‑1 (MQ=34) cgccgTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGcggcggacaaggatcttttatgcctagccaatctgatttgcgctacagctttgaggcactcgttggcaaagctgcattcgaagt < 7:296455‑M2/149‑85 (MQ=255) gccgTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACGGGTCAGGcggcggacaaggatcttttatgcctagccaatctgatttgcgctacagctttgaggcactcgttggcaaagctgaattcgaagtg < 3:249955‑M2/149‑86 (MQ=255) gccgTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGcggcggacaaggatcttttatgcctagccaatctgatttgcgctacagctttgaggcactcgttggcaaagctgcattcgaagtg < 8:18222‑M2/149‑86 (MQ=255) gTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTGACCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCTAGCGATACTTCaa > 1:232735/1‑149 (MQ=255) gTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAAc < 4:274627/149‑1 (MQ=34) tCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAAc > 4:10374/1‑148 (MQ=34) tCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTgg < 3:291984/149‑1 (MQ=37) cAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTgg < 1:74070/148‑1 (MQ=37) acacAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGgtg > 5:255116/1‑149 (MQ=37) cacaAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCttt > 2:286767/1‑115 (MQ=35) cacaAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGACAGACGTCAGAGCCTTCGGTGTTGGCTACATCGTGCGCACACGTGATCTTTCGATACGCCAGCGCTACTTCAACCCGTTGGgtgt > 8:129981/1‑149 (MQ=11) caAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAg > 2:105996/1‑149 (MQ=37) aaaGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGt > 7:168897/1‑149 (MQ=37) ccGGGCAGGCCATGCCCG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAg > 7:203976/1‑133 (MQ=11) ccGGGCAGGCCATGCCCG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAg < 8:203976/133‑1 (MQ=11) cgggcgggCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCAt > 1:54222/1‑149 (MQ=37) gggcgggcATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCAtt > 4:90170/1‑149 (MQ=37) ccTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCt < 2:238143/141‑1 (MQ=37) ccTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCt > 1:238143/1‑141 (MQ=37) ctggtcATTTGCACATTTCAGGCGGCGGGTGCGCGCCATTGGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGACCACGTGTTCTTTCGATACGCCAGCGATACTTCTACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTg < 3:267149/144‑1 (MQ=11) cGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTg > 8:22704/1‑149 (MQ=37) gCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTgggg > 5:23984/1‑148 (MQ=37) gCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTGGGGAAGCAc < 3:10374/148‑1 (MQ=37) cacaGGTCAGGcggcggacaaggatcttttatgcctagccaatctgatttgcgctacagctttgaggcactcgttggcaaagctgcattcgaagtggtgtcgttcgaactccgcgagggcatcagcgcaccctttgaactggagctga > 7:18222‑M2/1‑11 (MQ=255) aGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGGGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTGGGGAAGCACGGTAt < 7:129981/149‑1 (MQ=25) gTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTg < 7:242224/133‑1 (MQ=34) gTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTg > 8:242224/1‑133 (MQ=34) aGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTGGGGAAGCACGGTATTGAt < 7:22704/148‑1 (MQ=34) | ACCACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCGGGCATGGCCTG‑CCCGGGGCATTTGCACAGGTCAGGCGGCGGGTGCGCGCCAGTCGTCAGAGCCTTCGGTGTTGGCTACATCGTGAGCCCACGTGATCTTTCGATACGCCAGCGATACTTCAACCAGTTGGGTGTAGTTTTCATTGTCTTTGTCGAGTGCGTGGGGAAGCACGGTATTGAT > NC_002947/2991412‑2991703 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |