New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3059850 =	45 (0.840)	6 (0.120)	6/248	NT	12.7%	coding (1129/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	3059920 =	40 (0.790)					coding (1199/1275 nt)	PP_2671	sensor histidine kinase

CGATATTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3060005‑3059850 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcagccTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCAGCTTGCTGCGGGCGGTGCTG  >  NC_002947/3059920‑3060067                                                                                                                                                                                                                                                                                                                  CGATATTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGCGCCGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGCCGCTGCGGCAGGAGGGCGC                                                                                                                                                             >  2:209992/1‑149  GATATTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCC                                                                                                                                                            >  4:117967/1‑149  GATATTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCC                                                                                                                                                            >  4:122763/1‑149   ATATTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCG                                                                                                                                                           <  5:91795/149‑1    TATTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCG                                                                                                                                                           >  1:316298/1‑148      TTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAG                                                                                                                                                        <  5:262591/149‑1         ATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGTCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGCC                                                                                                                                                      <  1:9442/148‑1                                                                               CCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCACTGGGCGCTGGGGCTGGTGGTCGCCGCAGCCTTGGGGGGGAGTTACGAATTTTCAGCCGACCTGGAGGAGGCTGGGCGCTGGCCCTTAACATTCCACAGGAG                                                                               >  6:132601/1‑149                                                                                        gcgGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTTGGCGCCGCAGCCTTGGGGGTGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGATGTGTGATGA                                                                      <  5:132601/146‑1                                                                                        GCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATG                                                                       >  5:222958/1‑148                                                                                         CTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAA                                                                     >  6:79086/1‑149                                                                                                  CGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTT                                                            <  5:79086/149‑1                                                                                                                   CAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCG                                           <  6:222958/149‑1                                                                                                                                                     CCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCAGCTTGCTGCGGGC         >  4:47168/1‑149                                                                                                                                                      CGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCAGCTTGCTGCGGGCG        <  8:97250/149‑1                                                                                                                                                        CAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCAGCTTGCTGCGGGCGGT      <  2:234841/149‑1                                                                                                                                                        CAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCAGCTTGCTGCGGGCGGT      <  2:227204/149‑1                                                                                                                                                            CTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCAGCTTGCTGCGGGCGGTGCTG  <  6:262591/149‑1                                                                                                                                                                                                                                                                                                                  CGATATTCATCACACCTCCTGGGGAATGTTAAGGGCCAGCGCCCAGCCGCCTCCAGGGCGGCTGAAAATGCGTAACTCCCCCCCAAGGCTGCGGGCGCGCTCGGCCATCGAGTGCAGGCCTACCCCTGGGCGCTGGGGCTGGTGGGCGCCGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3060005‑3059850 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcagccTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGATGAATATCGTGTTGGTCGATGACCACGCCGTGGTCCGCCAGGGCTACGCCAGCTTGCTGCGGGCGGTGCTG  >  NC_002947/3059920‑3060067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.