New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3059850 =	45 (0.840)	6 (0.120)	6/248	NT	12.7%	coding (1129/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	3059920 =	40 (0.790)					coding (1199/1275 nt)	PP_2671	sensor histidine kinase

GCCGGCGCTGCCTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGAT  >  NC_002947/3059702‑3059997                                                                                                                                                     |                                                                                                                                                    cagcaccgcccgcagcaagctggcgtagccctggcggaccacggcgtggtcatcgaccaacacgatattcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaag                                                                                                                                                     <  6:262591‑M1/1‑1 (MQ=255)     accgcccgcagcaagctggcgtagccctggcggaccacggcgtggtcatcgaccaacacgatattcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTg                                                                                                                                                 <  2:227204‑M1/5‑1 (MQ=255)     accgcccgcagcaagctggcgtagccctggcggaccacggcgtggtcatcgaccaacacgatattcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTg                                                                                                                                                 <  2:234841‑M1/5‑1 (MQ=255)       gcTGCCTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTgcg                                                                                                                                               >  1:87855/1‑149 (MQ=255)       cgcccgcagcaagctggcgtagccctggcggaccacggcgtggtcatcgaccaacacgatattcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTgcg                                                                                                                                               <  8:97250‑M1/7‑1 (MQ=255)        gcccgcagcaagctggcgtagccctggcggaccacggcgtggtcatcgaccaacacgatattcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTgcgg                                                                                                                                              >  4:47168‑M1/142‑149 (MQ=255)        cTGCCTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTgcgg                                                                                                                                              >  7:225400/1‑149 (MQ=255)            cTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGcc                                                                                                                                          >  6:285161/1‑149 (MQ=255)            cTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGcc                                                                                                                                          >  2:293905/1‑149 (MQ=255)                         aaCGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAgc                                                                                                                             >  4:97121/1‑149 (MQ=255)                          aCGCATTTTTACCGCTTGCTGCAGGAGGCGTTGACCACCGTCGCCCGTCATGCCGGTGCCAGCCATGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAgc                                                                                                                             <  5:18552/148‑1 (MQ=255)                                ttGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAgg                                                                                                                      >  3:159355/1‑149 (MQ=255)                                  gTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAggg                                                                                                                     <  6:978/148‑1 (MQ=255)                                   tACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAgggg                                                                                                                    <  6:204219/148‑1 (MQ=255)                                   tACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCACCCAgggg                                                                                                                    >  2:102354/1‑148 (MQ=255)                                     ccGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAg                                                                                                                 <  1:293905/149‑1 (MQ=255)                                      cGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAgg                                                                                                                >  6:277242/1‑149 (MQ=255)                                       gCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGc                                                                                                               <  4:159355/149‑1 (MQ=255)                                          cggcgtggtcatcgaccaacacgatattcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTg                                                                                                            <  6:222958‑M1/42‑1 (MQ=255)                                           gctgcAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGt                                                                                                                   >  7:289955/1‑141 (MQ=255)                                           gctgcAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGt                                                                                                                   <  8:289955/141‑1 (MQ=255)                                           gctgcAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTg                                                                                                            <  2:87855/148‑1 (MQ=255)                                                  gaggCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGAt                                                                                                    >  1:273669/1‑149 (MQ=255)                                                   aggCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATg                                                                                                   <  5:285161/149‑1 (MQ=255)                                                           aacacgatattcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAgcg                                                                                           <  5:79086‑M1/59‑1 (MQ=255)                                                             cAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAgcgcg                                                                                         >  4:312983/1‑149 (MQ=255)                                                               aCGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGcc                                                                                       <  3:312983/149‑1 (MQ=255)                                                                 gTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCg                                                                                     <  8:225400/149‑1 (MQ=255)                                                                    ttcatcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAg                                                                                  >  6:79086‑M1/82‑149 (MQ=255)                                                                    gCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAg                                                                                  >  4:60435/1‑149 (MQ=255)                                                                     tcatcacacatcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcacccccaaGGCTGCGGCGCCAACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCccgccgc                                                                                 <  5:132601‑M1/69‑4 (MQ=255)                                                                      ccGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGcc                                                                                <  3:97121/149‑1 (MQ=255)                                                                      catcacacctcctggggaatgttaagggccagcgcccagccgcctccagggcggctgaaaatgcgtaactcccccccaaGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGc                                                                                 >  5:222958‑M1/80‑148 (MQ=255)                                                                         gCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTg                                                                             <  2:273669/149‑1 (MQ=255)                                                                          cATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTgg                                                                            <  5:108526/149‑1 (MQ=255)                                                                             gCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCTAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTggggg                                                                         >  6:270918/1‑149 (MQ=255)                                                                              ctcctgtggaatgttaagggccagcgcccagcctcctccaggtcggctgaaaattcgtaactcccccccaaGGCTGCGGCGACCACCAGCCCCAGCGCCCAGTGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTgggggg                                                                        >  6:132601‑M1/72‑149 (MQ=255)                                                                                     cagccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTAc                                                                 >  2:316298/1‑149 (MQ=255)                                                                                        ccagGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGAAGTTACGCa                                                              <  3:60435/149‑1 (MQ=255)                                                                                                          gCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAgc                                                      <  5:8717/139‑1 (MQ=255)                                                                                                          gCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAgc                                                      >  6:8717/1‑139 (MQ=255)                                                                                                            aGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAggc                                          >  3:200098/1‑149 (MQ=255)                                                                                                             gcgcAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGAATTTTCAGCCGCCCTGGAggcg                                         >  7:212842/1‑149 (MQ=255)                                                                                                              cgcAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCGAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCATCCTTGGGGGGGTGTTACGCATTTTCAGCCGCCCTGGAggcgg                                        <  1:203529/149‑1 (MQ=255)                                                                                                               gcAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAggcggc                                       <  4:200098/149‑1 (MQ=255)                                                                                                                      cAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGACGCCCTGGAGGCGGCTGGgcgc                                >  3:234214/1‑149 (MQ=255)                                                                                                                       aaGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCt                               >  4:282362/1‑149 (MQ=255)                                                                                                                         gggCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTgg                             <  3:282362/149‑1 (MQ=255)                                                                                                                            cTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGccc                          >  7:97250/1‑149 (MQ=255)                                                                                                                                cgcCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTaa                      <  5:270918/149‑1 (MQ=255)                                                                                                                                     gTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTc                 <  7:162352/149‑1 (MQ=255)                                                                                                                                         aTTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTccc               >  3:122763/1‑147 (MQ=255)                                                                                                                                         aTTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTccc               >  3:117967/1‑147 (MQ=255)                                                                                                                                             gcgACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCaggag         >  2:192626/1‑149 (MQ=255)                                                                                                                                             gcgACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCaggag         >  8:96497/1‑149 (MQ=255)                                                                                                                                             gcgACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGAGCTGGCCCGTAACGTTCCCCaggag         >  1:209992/1‑149 (MQ=255)                                                                                                                                                     GGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGACTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGtgat  <  1:9442‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCCGGCGCTGCCTGGGCCGAGCAGAACGCATTTGTACCGCTTGCTGCAGGAGGCGTTGACCAACGTCGCCCGGCATGCCGGTGCCAGCCAGGTGCGGGTGCGCCTGCAGCGCAGTCCCAAGGGCTTGCGCCTGTTCATTCGCGACAATGGCTGCGGCGCCCACCAGCCCCAGCGCCCAGGGGTAGGCCTGCACTCGATGGCCGAGCGCGCCCGCAGCCTTGGGGGGGAGTTACGCATTTTCAGCCGCCCTGGAGGCGGCTGGGCGCTGGCCCTTAACATTCCCCAGGAGGTGTGAT  >  NC_002947/3059702‑3059997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.