New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3249435 =	59 (1.100)	4 (0.080)	4/254	NT	7.1%	coding (1055/1704 nt)	ureC	urease subunit alpha
	?	NC_002947	3249516 =	48 (0.930)					coding (1136/1704 nt)	ureC	urease subunit alpha

CGCTTGACCCGGAAGTTGTCGCTGTACGGGGTGTCCGGTGCCAGCGGCCCGCGACGCAGCTTCATCTGGTGCGCCACCTGCCAGGTGCGCAGCACCACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3249585‑3249435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcACCAGATGAAGCTGCGTCGCGGGCCGCTGGCACCGGACACCCCGTACAGCGACAACTTCCGGGTCAAGCGCTACATCGCCAAGTACACCATCAA  >  NC_002947/3249516‑3249609                                                                                                                                                                                                                                                       CGCTTGACCCGGAAGTTGTCGCTGTACGGGGTGTCCGGTGCCAGCGGCCCGCGACGCAGCTTCATCTGGTGCGCCACCTGCCAGGTGCGCAGCACCACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGC                                                                                                  <  2:232216/149‑1   CTTGACCCGGAAGTTGTCGCTGTACGGGGTGTCCGGTGCCAGCGGCCCGCGACGCAGCTTCATCTGGTGCGCCACCTGCCAGGTGCGCAGCACCACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGC                                                                                                >  1:328840/1‑149                                                                     GTGCGCCACCTGCCAGGTGCGCAGCACCACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCACCAGATGAAGCTGCGTCGCGGGCCGCTGGCACCGGACACCCCGTACAGCGACAAC                                        <  5:13977/139‑1                                                                     GTGCGCCACCTGCCAGGTGCGCAGCACCACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCACCAGATGAAGCTGCGTCGCGGGCCGCTGGCACCGGACACCCCGTACAGCGACAAC                                        >  6:13977/1‑139                                                                         GCCACCTGCCAGGTGCGCAGCACCACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCACCAGATGAAGCTGCGTCGCGGGCCGCTGGCACCGGACACCCCGTACAGCGACAACTTCCGGGTCAAGCG                          >  4:115959/1‑149                                                                                                 ACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCACCAGATGAAGCTGCGTCGCGGGCCGCTGGCACCGGACACCCCGTACAGCGACAACTTCCGGGTCAAGCGCTACATCGCCAAGTACACCATCAA  <  3:115959/149‑1                                                                                                                                                                                                                                                       CGCTTGACCCGGAAGTTGTCGCTGTACGGGGTGTCCGGTGCCAGCGGCCCGCGACGCAGCTTCATCTGGTGCGCCACCTGCCAGGTGCGCAGCACCACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3249585‑3249435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcACCAGATGAAGCTGCGTCGCGGGCCGCTGGCACCGGACACCCCGTACAGCGACAACTTCCGGGTCAAGCGCTACATCGCCAAGTACACCATCAA  >  NC_002947/3249516‑3249609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.