New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3461173 =	44 (0.820)	4 (0.080)	3/244	NT	10.4%	coding (202/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	3461271 =	28 (0.560)					coding (104/1017 nt)	PP_3076	ABC transporter permease

CACCGCCTGGGCTGGGTGTCGCTGTGGTTGTTTGCCGGCCTTCTGCTGCTCAGCCTTTGCGCCGAACTGGTGGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3461329‑3461173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttcggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAGGGT  >  NC_002947/3461271‑3461418                                                                                                                                                                                                                                                                                                                   ccCCGCCTGGGCTGGGGGTCGCTGTGGTTGTTTGCCTGCCTTCTGCTGCTCAGCCTTTGCGCCGAACTGGTCGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGCCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCA                                                                                                                                                              <  4:125720/147‑1   CCGCCTGGGCTGGGTGTCGCTGTGGTTGTTTGCCGGCCTTCTGCTGCTCAGCCTTTGCGCCGAACTGGTGGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGT                                                                                                                                                            >  5:306571/1‑149     GCCTGGGCTGGGTGTCGCTGTGGTTGTTTGCCGGCCTTCTGCTGCTCAGCCTTTGCGCCGAAAAGGTGGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGT                                                                                                                                                            >  1:101855/1‑147          GGCTGGGTGTCGCTGTGGTTGTTTGCCGGCCTTCTGCTGCTCAGCCTTTGCGCCGAACTGGTGGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGTTCGGCG                                                                                                                                                      <  4:310399/148‑1                                                             GCCGAACTGGTGGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGTTCGGCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCC                                                                                                    >  6:209524/1‑147                                                             GCCGAACTGGTGGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGTTCGGCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCC                                                                                                    >  6:212863/1‑147                                                                                                      CAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGTTCGGCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAG                                                          <  5:209524/148‑1                                                                                                        AGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGTTCGGCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGG                                                       <  5:212863/149‑1                                                                                                                                                         CGGCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGC       <  1:341087/148‑1                                                                                                                                                         CGGCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAG        >  1:185915/1‑147                                                                                                                                                           GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAGG    <  3:310399/149‑1                                                                                                                                                             GCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAGGGT  <  6:299006/149‑1                                                                                                                                                                                                                                                                                                                   CACCGCCTGGGCTGGGTGTCGCTGTGGTTGTTTGCCGGCCTTCTGCTGCTCAGCCTTTGCGCCGAACTGGTGGCCAACGACAAGCCACTGCTGCTGGGCTACAAGGGCAATGTGTACGTTCCGGCGCTCAAACGCTACACCGAGCAGCAGTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3461329‑3461173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttcggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAGGGT  >  NC_002947/3461271‑3461418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.