New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3461173 =	44 (0.820)	4 (0.080)	3/244	NT	10.4%	coding (202/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	3461271 =	28 (0.560)					coding (104/1017 nt)	PP_3076	ABC transporter permease

CTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCC  >  NC_002947/3461025‑3461320                                                                                                                                                     |                                                                                                                                                     accctgctcgacccgcgcatcgacttcgatacgagggcgcactgatgctatcgcccctgtcgcgccgtcgcctgcaacgttttcgccgccaccgcctgggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgc                                                                                                                                                      <  6:299006‑M1/1‑1 (MQ=255)  ggggcgggcGGGGGGTGGCCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGAGAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGTCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCccg                                                                                                                                                     <  7:291616/148‑1 (MQ=255)   cctgctcgacccgcgcatcgacttcgatacgagggcgcactgatgctatcgcccctgtcgcgccgtcgcctgcaacgttttcgccgccaccgcctgggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgcgc                                                                                                                                                    <  3:310399‑M1/3‑1 (MQ=255)      gctcgacccgcgcatcgacttcgatacgagggcgcactgatgctatcgcccctgtcgcgccgtcgcctgcaacgttttcgccgccaccgcctgggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgCGCCg                                                                                                                                                  <  1:341087‑M1/5‑1 (MQ=255)       ctcgacccgcgcatcgacttcgatacgagggcgcactgatgctatcgcccctgtcgcgccgtcgcctgcaacgttttcgccgccaccgcctgggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgCGCCg                                                                                                                                                  >  1:185915‑M1/143‑147 (MQ=255)         gcTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAAct                                                                                                                                              <  4:86070/149‑1 (MQ=255)           tGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAActgc                                                                                                                                            >  2:172755/1‑149 (MQ=255)                 tGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCg                                                                                                                                      <  1:262057/149‑1 (MQ=255)                   ggCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGgt                                                                                                                                    >  4:164745/1‑149 (MQ=255)                      aCCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAActgctg                                                                                                                                          <  4:178233/140‑1 (MQ=255)                      aCCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAActgctg                                                                                                                                          >  3:178233/1‑140 (MQ=255)                        cTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGc                                                                                                                               >  1:159676/1‑149 (MQ=255)                            aGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGttt                                                                                                                           <  1:137711/149‑1 (MQ=255)                             ggTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTg                                                                                                                          <  2:192316/149‑1 (MQ=255)                              gTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGa                                                                                                                         <  3:164745/149‑1 (MQ=255)                                  tAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGttt                                                                                                                           <  4:184502/143‑1 (MQ=255)                                  tAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGttt                                                                                                                           >  3:184502/1‑143 (MQ=255)                                               cGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTAcaca                                                                                                        >  5:25653/1‑149 (MQ=255)                                                ggCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACAt                                                                                                       >  1:335255/1‑149 (MQ=255)                                                 gCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACAtt                                                                                                      >  3:271861/1‑149 (MQ=255)                                                 gCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACAtt                                                                                                      >  7:264496/1‑149 (MQ=255)                                                   aCTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGc                                                                                                    <  1:154131/149‑1 (MQ=255)                                                      cccctgtcgcgccgtcgcctgcaacgttttcgccgccaccgcctgggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCt                                                                                                 <  5:212863‑M1/54‑1 (MQ=255)                                                       aaCGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCtt                                                                                                >  1:33056/1‑149 (MQ=255)                                                         ctgtcgcgccgtcgcctgcaacgttttcgccgccaccgcctgggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTg                                                                                               <  5:209524‑M1/56‑1 (MQ=255)                                                         cGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGt                                                                                              <  2:33056/149‑1 (MQ=255)                                                         cGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGt                                                                                              <  6:139511/149‑1 (MQ=255)                                                                 gTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAgcgc                                                                                                                     <  2:303805/118‑1 (MQ=255)                                                                 gTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAgcgc                                                                                                                     >  1:303805/1‑118 (MQ=255)                                                                 gTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTCGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCcagc                                                                                      >  5:239938/1‑149 (MQ=255)                                                                  tGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCcag                                                                                       >  8:99364/1‑147 (MQ=255)                                                                      aaCAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCcagcagcag                                                                                 >  2:296710/1‑149 (MQ=255)                                                                       aCAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGt                                                                                <  5:227256/149‑1 (MQ=255)                                                                               cAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTc                                                                        <  5:170637/149‑1 (MQ=255)                                                                                  ccACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGtt                                                                     >  2:101855/1‑149 (MQ=255)                                                                                   gaCCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTg                                                                    <  1:172755/148‑1 (MQ=255)                                                                                   cACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTg                                                                    <  8:264496/149‑1 (MQ=255)                                                                                   cACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTg                                                                    <  2:159676/149‑1 (MQ=255)                                                                                    aCCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTgg                                                                   <  4:115714/149‑1 (MQ=255)                                                                                          ttCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGccac                                                               <  7:99364/147‑1 (MQ=255)                                                                                             aGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGtt                                                          >  2:188731/1‑149 (MQ=255)                                                                                                   ggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑gc                                                     >  6:209524‑M1/51‑147 (MQ=255)                                                                                                   ggctgggtgtcgctgtggttgtttgccggccttctgctgctcagcctttgCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑gc                                                     >  6:212863‑M1/51‑147 (MQ=255)                                                                                                         gcgcACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAgg                                              <  6:25653/148‑1 (MQ=255)                                                                                                          cgcACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCt                                            <  2:335255/149‑1 (MQ=255)                                                                                                           gcACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTacac                                                                                                         <  6:110059/88‑1 (MQ=255)                                                                                                           gcACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTacac                                                                                                         >  5:110059/1‑88 (MQ=255)                                                                                                                tAGGCGCTGCGGTAGTCGGGCTGAGACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGagcag                                      >  3:183492/1‑149 (MQ=255)                                                                                                                tAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGagcag                                      <  3:328287/149‑1 (MQ=255)                                                                                                                  ggCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAgcagca                                    <  6:239938/149‑1 (MQ=255)                                                                                                                   gcgcTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGagcag                                      >  6:306571/1‑146 (MQ=255)                                                                                                                           gTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCGCGCGCAAAGGCTGAGCAGCAGAAGGCCg                            <  1:188731/149‑1 (MQ=255)                                                                                                                                   gCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAaacaac                   <  4:271861/149‑1 (MQ=255)                                                                                                                                               cttGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcc       >  2:3336/2‑149 (MQ=255)                                                                                                                                                  gCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAaacaa                    >  4:190442/1‑133 (MQ=255)                                                                                                                                                  gCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAaacaa                    <  3:190442/133‑1 (MQ=255)                                                                                                                                                    ccgccgAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcccagcc  <  4:183492/149‑1 (MQ=255)                                                                                                                                                     CGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcccagcc  <  4:310399‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCC  >  NC_002947/3461025‑3461320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.